View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_3 (Length: 645)
Name: NF0845_low_3
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 341 - 635
Target Start/End: Complemental strand, 53214803 - 53214512
Alignment:
| Q |
341 |
gctatttatagcaacaacaccacccagactatagctacaatcaatatggatgtgtaaaacgggactaaccagtcaaaggttgttgacaatgccacccatc |
440 |
Q |
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| T |
53214803 |
gctatttatagc---aacaccacccagactatagctacaatcaatatggatgtgtaaaacgggactaaccagtcaaaggttgttgacaatgccacccatc |
53214707 |
T |
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| Q |
441 |
agccaaacctcggtggcaataatgttgtccatgttctcgggatgtttcaaataatataatccataaacaatattttagtggttcagatcattacatctaa |
540 |
Q |
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| T |
53214706 |
agccaaacctcggtggcaataatgttgtccatgttctcgggatgtttcaaataatataatccataaacaatattttagtggttcagatcattacatctga |
53214607 |
T |
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| Q |
541 |
aacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatattttggattatttaatctgaaccagtcaaatacaagatttttctgtg |
635 |
Q |
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| T |
53214606 |
aacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatattttggattatttaatctgaatcagtcaaatacaagatttttctgtg |
53214512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 53215047 - 53214879
Alignment:
| Q |
97 |
aagctggagtacatgacaatggagagtgagaaggtgaaaacaatctcattttcaaaactgatctgaaatacaagttgatatggaacaacacactcaactc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53215047 |
aagctggagtacatgacaatggagagtgagaaggtgaaaacaatctcattttcaaaactgatctgaaatacaagttgatatggaacaacacactcaactc |
53214948 |
T |
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| Q |
197 |
aatcatactaaccccacaactacttatacaacggcctctgtggaaaccataacaacataaatgtccccc |
265 |
Q |
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| T |
53214947 |
aatcatactaaccccacaactacttatacaacggcctctgtggaaaccataacaacataaatgtccccc |
53214879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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