View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_31 (Length: 315)
Name: NF0845_low_31
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 43324759 - 43325001
Alignment:
| Q |
73 |
caacaatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttctttttgaattgtaaagcttccaatgtagaattccaaccaca |
172 |
Q |
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| T |
43324759 |
caacaatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttcttttggaattgtaaagcttccaatgtagaattccaaccaca |
43324858 |
T |
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| Q |
173 |
atgagtgataaaacaacctacagaattgtgttgcaaaatctctttttgtggtgcccaagaaacaaccaatcctttcccttgcttgaaaatcctctccaaa |
272 |
Q |
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| T |
43324859 |
atgagtgataaaacaacctacagaattgtgttccaaaatctctttttgtggggcccaagaaacaaccaatcctttcccttgcttgaaaatcctctccaaa |
43324958 |
T |
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| Q |
273 |
aacccaattggtaacccttgacgccaagaagacctcaaaaccc |
315 |
Q |
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| T |
43324959 |
aacccaattggtaacccttgacgccaagaagacctcaaaaccc |
43325001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 30817184 - 30817232
Alignment:
| Q |
144 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
192 |
Q |
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| T |
30817184 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30817232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 30858645 - 30858693
Alignment:
| Q |
144 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
192 |
Q |
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| T |
30858645 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30858693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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