View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_38 (Length: 285)

Name: NF0845_low_38
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_38
NF0845_low_38
[»] scaffold0422 (1 HSPs)
scaffold0422 (108-245)||(5384-5523)
[»] chr4 (3 HSPs)
chr4 (108-243)||(25985610-25985744)
chr4 (139-243)||(15566771-15566875)
chr4 (145-243)||(15579417-15579514)
[»] scaffold0503 (2 HSPs)
scaffold0503 (108-240)||(790-922)
scaffold0503 (108-240)||(5357-5489)
[»] chr1 (3 HSPs)
chr1 (109-245)||(13186802-13186940)
chr1 (139-243)||(39455420-39455524)
chr1 (186-245)||(13464046-13464105)
[»] scaffold0458 (1 HSPs)
scaffold0458 (139-243)||(8193-8297)
[»] scaffold0014 (1 HSPs)
scaffold0014 (139-243)||(4811-4915)
[»] chr6 (1 HSPs)
chr6 (139-243)||(15665187-15665291)
[»] chr7 (1 HSPs)
chr7 (111-243)||(4892355-4892490)
[»] scaffold1271 (1 HSPs)
scaffold1271 (109-245)||(743-881)


Alignment Details
Target: scaffold0422 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 5523 - 5384
Alignment:
Q  108 cgggtcttacaccctatatacat--cccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagt 205  Q
    |||||||||||||||||||| ||  |||||| |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5523 cgggtcttacaccctatatatatgtccccttcgaaccggttcggtactctggaaccgacccaggacttgaaccgaactggccccagcctgtcctctaagt 5424  T
Q  206 ccaattccgaaattgttcttcggcccaactctctgctgct 245  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5423 ccaattccgaaattgttcttcggcccaactctctgctgct 5384  T

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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 25985610 - 25985744
Alignment:
Q  108 cgggtcttacaccctatatacatcccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtcc 207  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25985610 cgggtcttacaccctatatatatccccttcgaaccggttcggttctctggaaccgacccagggtttgaaccgaaccggccccagcctgtcctctaagtcc 25985709  T
Q  208 aattccgaaattgttcttcggcccaactctctgctg 243  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25985710 aattccgaaattgttcttcgg-ccaactctctgctg 25985744  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 15566875 - 15566771
Alignment:
Q  139 aaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 238  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  15566875 aaccggttcggttctctggaaccgacccaggacttgaaccgaaccggccccagtctgtcctctaggtccaattccgaaactgttcttcggcccaactctc 15566776  T
Q  239 tgctg 243  Q
    |||||    
T  15566775 tgctg 15566771  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 15579514 - 15579417
Alignment:
Q  145 ttcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctctgctg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  15579514 ttcggttctctggaaccgacccaggacttgaaccgaaccggccc-agtctgtcctctaggtccaattccgaaactgttcttcggcccaactctctgctg 15579417  T

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Target: scaffold0503 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 922 - 790
Alignment:
Q  108 cgggtcttacaccctatatacatcccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtcc 207  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||    
T  922 cgggtcttacaccctatatatatcccctacgaaccggttcggttctctggaaccgacctaggacttgaaccgaaccggccctagcctgtcctctaactcc 823  T
Q  208 aattccgaaattgttcttcggcccaactctctg 240  Q
    |||||||||||||||||||||||||||||||||    
T  822 aattccgaaattgttcttcggcccaactctctg 790  T

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Target: scaffold0503; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 5489 - 5357
Alignment:
Q  108 cgggtcttacaccctatatacatcccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtcc 207  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||    
T  5489 cgggtcttacaccctatatatatcccctacgaaccggttcggttctctggaaccgacctaggacttgaaccgaaccggccctagcctgtcctctaactcc 5390  T
Q  208 aattccgaaattgttcttcggcccaactctctg 240  Q
    |||||||||||||||||||||||||||||||||    
T  5389 aattccgaaattgttcttcggcccaactctctg 5357  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 13186802 - 13186940
Alignment:
Q  109 gggtcttacaccctatatacat--cccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtc 206  Q
    ||||||||||||||||||| ||  |||||  |||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  13186802 gggtcttacaccctatatatatgtcccctccgaaccggttcggatctctgaaaccgacccaggatttgaaccgaaccggccccagcctgtcctctaagcc 13186901  T
Q  207 caattccgaaattgttcttcggcccaactctctgctgct 245  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  13186902 caattccgaatttgttcttcggcccaactctctgctgct 13186940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 39455420 - 39455524
Alignment:
Q  139 aaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 238  Q
    ||||| |||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39455420 aaccggttcggttctctggaactgacccagggtttgaactgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 39455519  T
Q  239 tgctg 243  Q
    |||||    
T  39455520 tgctg 39455524  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 13464046 - 13464105
Alignment:
Q  186 ccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctctgctgct 245  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||||    
T  13464046 ccccagcctgtcctctaagtccaactccgaaattgctctttggcccaaatctctactgct 13464105  T

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Target: scaffold0458 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 8297 - 8193
Alignment:
Q  139 aaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 238  Q
    ||||| |||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8297 aaccggttcggttctctggaactgacccagggtttgaactgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 8198  T
Q  239 tgctg 243  Q
    |||||    
T  8197 tgctg 8193  T

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Target: scaffold0014 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 4811 - 4915
Alignment:
Q  139 aaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 238  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||     
T  4811 aaccggttcggttctttggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaggtccaattctgaaactgttcttcggcccaactctt 4910  T
Q  239 tgctg 243  Q
    |||||    
T  4911 tgctg 4915  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 15665291 - 15665187
Alignment:
Q  139 aaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 238  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||     
T  15665291 aaccggttcggttctttggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaggtccaattctgaaactgttcttcggcccaactctt 15665192  T
Q  239 tgctg 243  Q
    |||||    
T  15665191 tgctg 15665187  T

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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 4892490 - 4892355
Alignment:
Q  111 gtcttacaccctatatacat--cccctttgaaccgattcggttctc-tggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtcc 207  Q
    ||||||||||||||||| ||  ||||||||||||| || |||| || | ||||||||| |||||||||||| | | ||||||| ||||||||||||||||    
T  4892490 gtcttacaccctatatatatgtcccctttgaaccggtttggttttcctagaaccgaccaaggacttgaaccaatctggccccaacctgtcctctaagtcc 4892391  T
Q  208 aattccgaaattgttcttcggcccaactctctgctg 243  Q
    ||||||||||||||||||||||||||||||||||||    
T  4892390 aattccgaaattgttcttcggcccaactctctgctg 4892355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 881 - 743
Alignment:
Q  109 gggtcttacaccctatatacat--cccctttgaaccgattcggttctctggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaagtc 206  Q
    ||||||||||||||||||| ||  |||||| |||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||| |    
T  881 gggtcttacaccctatatatatgtccccttcgaaccggttcggttctctggaaccgacccagaatttgaaccgaaccgaccccagcctttcctctaagcc 782  T
Q  207 caattccgaaattgttcttcggcccaactctctgctgct 245  Q
    |||  ||||| ||| |||||||| || |||||| |||||    
T  781 caacaccgaatttgctcttcggctcagctctctactgct 743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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