View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_45 (Length: 260)
Name: NF0845_low_45
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 35139859 - 35140091
Alignment:
| Q |
30 |
aattgcactggaatatttagataaatgtcatttttatcacttattacttcatattttaaatcggttaagaaaccatcttcaattagttacataacagaaa |
129 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35139859 |
aattgcactgaaatatttagataaatgtcatttttatcacttattacttcatattttaaatcggttaagaaaccatcttcaattagttacataacagaaa |
35139958 |
T |
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| Q |
130 |
tttcctccaaacataattgtatcaacaacaacttttgtttgctgaacttaat--tataagtaaactgtaactagataattcattccatttaattttacta |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35139959 |
tttcctccaaacataattgtatcaacaacaacttttgtttgctgaacttaattatataagtaaactgtaactagataattcattccatttaattttacta |
35140058 |
T |
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| Q |
228 |
ttctaaaagtattactaaatataagtaaattct |
260 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35140059 |
ttctaaaagtattactaaatataagtaaattct |
35140091 |
T |
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