View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_47 (Length: 252)
Name: NF0845_low_47
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34432612 - 34432853
Alignment:
| Q |
1 |
gttgttgatgatgagtttattggagagnnnnnnnngtgagaagatgaaaaggatgtgaacagattggagtgagagggaatttaacatgaatttaaggagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34432612 |
gttgttgatgatgagtttattggagagaaaaaaaagtgagaagatgaaaaggatatgaacagattggagtgagagggaatttaacatgaatttaaggagt |
34432711 |
T |
|
| Q |
101 |
aggagatgagagaagagannnnnnnnatttaatagataaataaatttaggtgagttgggctcattagagtccggacatgtctcaaagctc-aaaaaacgt |
199 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
34432712 |
aggagatgagagaagaaattttatttatttaatagataaataaatttaggtgagttgggctcattagagtccggacatgtctcaaagctcaaaaaaacgt |
34432811 |
T |
|
| Q |
200 |
gttgacaaaaatacttgtagattacaccaacaaagtcttcat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34432812 |
gttgacaaaaatacttgtagattacaccaacaaagtcttcat |
34432853 |
T |
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