View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_49 (Length: 251)
Name: NF0845_low_49
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 34432266 - 34432487
Alignment:
| Q |
30 |
tgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttttccatctaccgtgaaccgttttgaaccttgtttcctccaaaagtac |
129 |
Q |
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| T |
34432266 |
tgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttttccatctaccgtgaaccgttttgaaccttgtttcctccaaaagtac |
34432365 |
T |
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| Q |
130 |
catggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttttgcaccatgtga |
229 |
Q |
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| T |
34432366 |
catggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttttgcaccatgtga |
34432465 |
T |
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| Q |
230 |
ttgtgatcaaactgcagtgacc |
251 |
Q |
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| T |
34432466 |
ttgtgatcaaacggcagtgacc |
34432487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 43403193 - 43403407
Alignment:
| Q |
30 |
tgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttt---tccatctaccgtgaaccgttttgaaccttgtttcctccaaaag |
126 |
Q |
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| T |
43403193 |
tgtttctccgttgaatttagcagctttaaggtcccagaaaatgtcaacagctttgtttccatcaactataaaccgttttgaaccttgttttctccaaaaa |
43403292 |
T |
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| Q |
127 |
taccatggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttttgcaccatg |
226 |
Q |
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| T |
43403293 |
taccatggctttagttcaactttgcaggtatattgggcttctccttctggaccttctactgatattgatagtccatgaagcaacaagtttttgcaccatg |
43403392 |
T |
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| Q |
227 |
tgattgtgatcaaac |
241 |
Q |
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| T |
43403393 |
tgatggttatcaaac |
43403407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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