View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_5 (Length: 477)

Name: NF0845_low_5
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_5
NF0845_low_5
[»] chr8 (3 HSPs)
chr8 (157-433)||(3312955-3313231)
chr8 (208-433)||(3393330-3393555)
chr8 (238-433)||(3362328-3362523)
[»] chr5 (1 HSPs)
chr5 (157-433)||(15801089-15801365)
[»] chr7 (6 HSPs)
chr7 (1-190)||(18924249-18924435)
chr7 (12-100)||(34727387-34727475)
chr7 (16-100)||(18929251-18929335)
chr7 (26-100)||(34730559-34730633)
chr7 (26-100)||(34735158-34735232)
chr7 (56-99)||(34721114-34721157)
[»] chr4 (13 HSPs)
chr4 (60-99)||(4333817-4333856)
chr4 (36-99)||(6547564-6547627)
chr4 (36-99)||(6814017-6814080)
chr4 (60-99)||(4322800-4322839)
chr4 (36-99)||(6500009-6500072)
chr4 (56-99)||(6624110-6624153)
chr4 (36-99)||(6649298-6649361)
chr4 (56-99)||(6751090-6751133)
chr4 (36-99)||(6794687-6794750)
chr4 (56-98)||(6756709-6756751)
chr4 (62-99)||(4343207-4343244)
chr4 (63-99)||(4135482-4135518)
chr4 (51-99)||(6834411-6834459)
[»] chr6 (1 HSPs)
chr6 (35-91)||(5075404-5075460)
[»] scaffold0373 (1 HSPs)
scaffold0373 (36-99)||(11553-11616)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 157 - 433
Target Start/End: Complemental strand, 3313231 - 3312955
Alignment:
Q  157 cttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactcacatcatcaagttcaacaa 256  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||||| || ||| ||||| ||| |   |||||||||||||||| ||||||    
T  3313231 cttgttgtgatgattattatacttcctggaccaatcccatttcgatttccgcataatgaattgaattgatcaaactcactcacatcatcaagtacaacaa 3313132  T
Q  257 gtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgaggatatctgaaagaagttg 356  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||  |||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  3313131 gtgcccgttttgtgacaagtcgttccttaatcatagcttttccaaactcaacactatgcacctttatcttccttgttttgaggatatctgaaagaagttg 3313032  T
Q  357 ttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaatt 433  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  3313031 ttcttgtaaatcgattctacccctatctttctcccaaacttctctaatattagcaaggaagctttgatcttcaaatt 3312955  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 208 - 433
Target Start/End: Original strand, 3393330 - 3393555
Alignment:
Q  208 catagtgcatttaattgctcagaggaactcacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcga 307  Q
    ||||||||||| |||||||||     ||| |||||||||||| || |||||    ||||||  | |||||||| ||||||||||||||||||   ||| |    
T  3393330 catagtgcattaaattgctcaagctcactaacatcatcaagtacagcaagtatgcgttttgaacgaagtcgttgcttgatcatagcttttccttgctcaa 3393429  T
Q  308 tactatgcacctttatctttcttgttttgaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatatt 407  Q
     |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3393430 cactaagcacctttatctttcttgttttcaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttctctaatatt 3393529  T
Q  408 agcaacgaagctttgatcttcaaatt 433  Q
    ||||||||||||||||||||||||||    
T  3393530 agcaacgaagctttgatcttcaaatt 3393555  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 238 - 433
Target Start/End: Complemental strand, 3362523 - 3362328
Alignment:
Q  238 acatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttga 337  Q
    |||||||||||| || |||||    |||||| || |||| ||| ||||||||||| ||||||   ||| | |||| ||||||||||||||||||||||||    
T  3362523 acatcatcaagtacagcaagtatgcgttttgcgcgaagttgttgcttgatcatagtttttccttgctcaacactaagcacctttatctttcttgttttga 3362424  T
Q  338 ggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaatt 433  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  3362423 ggatatctgaaagaaattgttcttgtaaatcgattctgcccctatctttctcccaaacttctctaatattagcaaggaagctttgattttcaaatt 3362328  T

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Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 157 - 433
Target Start/End: Complemental strand, 15801365 - 15801089
Alignment:
Q  157 cttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactcacatcatcaagttcaacaa 256  Q
    |||||||||||||||||||| |||||  |||||||||||||||| ||||| |||| |||||||||||||||    | ||| ||||||||||||  |||||    
T  15801365 cttgttgtgatgattattatgcttcctggaccaatcccatttcgatttccacataatgcatttaattgctcgcgtgtactgacatcatcaagtataacaa 15801266  T
Q  257 gtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgaggatatctgaaagaagttg 356  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||||| | | ||||||||||||  ||||||||||| ||||||||||||||||||||    
T  15801265 gtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttg 15801166  T
Q  357 ttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaatt 433  Q
    |||||||||||| |||   ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15801165 ttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaatt 15801089  T

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Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 18924435 - 18924249
Alignment:
Q  1 ccatgacagttcataacaacttctctagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924435 ccatgacagttcataacaacttctctagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 18924336  T
Q  101 gtatgttcatcggttccattttataaactcgataatcattaagcatataattaagccttgttgtgatgattattatacttccatgaccaa 190  Q
    ||||||||||||||||||||||||||||||||||   || |||||||||| || | |||||||||||||||||||||||||| |||||||    
T  18924335 gtatgttcatcggttccattttataaactcgata---ataaagcatataactatgtcttgttgtgatgattattatacttccttgaccaa 18924249  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 34727387 - 34727475
Alignment:
Q  12 cataacaacttctctagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 100  Q
    ||||||||| ||  ||||||||||| ||||| |||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  34727387 cataacaacatcggtagaaaggtcaccaaaaccttctataggaattggttgcttgaatgcatgccaactaaaaagctcaagagattcat 34727475  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 18929335 - 18929251
Alignment:
Q  16 acaacttctctagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 100  Q
    ||||| ||| ||||||||| | | ||| |||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  18929335 acaacatctgtagaaaggttaccgaaaccttttataggatttggttgcttgaatgcatgccaactaaaaagctcaagagattcat 18929251  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 34730559 - 34730633
Alignment:
Q  26 tagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 100  Q
    ||||||||||| ||||| |||| |||||| |||||||||||||| ||| | |||| |||||||||||||||||||    
T  34730559 tagaaaggtcaccaaaaccttctataggaattggttgcttgaatacatgccaactgaaaagctcaagagattcat 34730633  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 34735158 - 34735232
Alignment:
Q  26 tagaaaggtcagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 100  Q
    ||||||| ||| ||||| |||| |||||| ||||||| |||||||||| | ||||||||||||||||||||||||    
T  34735158 tagaaagctcaccaaaaccttctataggaattggttgtttgaatgcatgccaactaaaaagctcaagagattcat 34735232  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 34721114 - 34721157
Alignment:
Q  56 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  34721114 ttggttgcttgaatgcataccaactaaaaagttcaagagattca 34721157  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 4333856 - 4333817
Alignment:
Q  60 ttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4333856 ttgcttgaatgcatgcaaactaaaaagctcaagagattca 4333817  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 6547564 - 6547627
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||| || ||| |||||||||||||||||| | |||| || |||||||||||||||    
T  6547564 agcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattca 6547627  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 6814080 - 6814017
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  6814080 agcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 6814017  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 4322800 - 4322839
Alignment:
Q  60 ttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  4322800 ttgcttgaatgcatgccaactaaaaagctcaagagattca 4322839  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 6500009 - 6500072
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    ||||||||||||  | ||| |||||||||||||||||| | | || ||||||||||||||||||    
T  6500009 agcaaaatcttctgttggagttggttgcttgaatgcatgccagctgaaaagctcaagagattca 6500072  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 6624110 - 6624153
Alignment:
Q  56 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  6624110 ttggttgcttgaatgcatgccaactgaaaagctcaagagattca 6624153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 6649361 - 6649298
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||   ||||| ||||||| |||||||||| | |||| ||||||||||||||||||    
T  6649361 agcaaaatcttttgtaggacttggttgattgaatgcatgccaactgaaaagctcaagagattca 6649298  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 6751133 - 6751090
Alignment:
Q  56 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  6751133 ttggttgcttgaatgcatgccaactgaaaagctcaagagattca 6751090  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 6794750 - 6794687
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||| ||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  6794750 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 6794687  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 6756751 - 6756709
Alignment:
Q  56 ttggttgcttgaatgcatacaaactaaaaagctcaagagattc 98  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  6756751 ttggttgcttgaatgcatgccaactgaaaagctcaagagattc 6756709  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 4343244 - 4343207
Alignment:
Q  62 gcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||||||| | |||||||||||||||||||||||    
T  4343244 gcttgaatgcatgccaactaaaaagctcaagagattca 4343207  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 4135482 - 4135518
Alignment:
Q  63 cttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    ||||||||||| | |||||||||||||||||||||||    
T  4135482 cttgaatgcatgccaactaaaaagctcaagagattca 4135518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 6834459 - 6834411
Alignment:
Q  51 aggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||| ||||| |||||||||||| | |||| ||||||||||||||||||    
T  6834459 aggacttggtagcttgaatgcatgccaactgaaaagctcaagagattca 6834411  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 5075404 - 5075460
Alignment:
Q  35 cagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaa 91  Q
    ||||||||||||| |||||| ||| ||| |||||||||| | |||||||||||||||    
T  5075404 cagcaaaatcttctataggacttgcttgtttgaatgcatgccaactaaaaagctcaa 5075460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 11553 - 11616
Alignment:
Q  36 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 99  Q
    |||||||| ||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  11553 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 11616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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