View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_50 (Length: 251)
Name: NF0845_low_50
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_50 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 45178718 - 45178958
Alignment:
| Q |
11 |
cacagatcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattgaatacttgtctgatactgatactaatttgttaagt |
110 |
Q |
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| T |
45178718 |
cacagatcttatttgatagaacctattaagcactaatacttgcattatctttacctattgtattgaatacttgtttgatactgatactaatttgttaagt |
45178817 |
T |
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| Q |
111 |
acctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccagg |
210 |
Q |
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| T |
45178818 |
acctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccagg |
45178917 |
T |
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| Q |
211 |
tcgttgcatattagcttcaaaagtttgctgcatatttttct |
251 |
Q |
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| T |
45178918 |
tcgttgcatattagctttaaaaatttgctgcatatttttct |
45178958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 45169233 - 45169284
Alignment:
| Q |
198 |
tttcatctccaggtcgttgcatattagcttcaaaagtttgctgcatatttttc |
250 |
Q |
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| T |
45169233 |
tttcatcttcaggtcgttgcctattagctt-aaaaatttgctgcatatttttc |
45169284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 45168922 - 45168980
Alignment:
| Q |
17 |
tcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattg |
75 |
Q |
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| T |
45168922 |
tcttattggacagaacctatgaagcactaatatttgcattgtcttcacctattctattg |
45168980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 251
Target Start/End: Original strand, 45172007 - 45172130
Alignment:
| Q |
128 |
ttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagc-t |
226 |
Q |
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| T |
45172007 |
ttttttatccaaagtccatttcaacatacaattttgttctctgcctaagactatttatatgcatga-cttttccatctacaggtcgttaaatattagctt |
45172105 |
T |
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| Q |
227 |
tcaaaagtttgctgcatatttttct |
251 |
Q |
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| T |
45172106 |
taaaaaaattgctgcatatttttct |
45172130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 24123768 - 24123723
Alignment:
| Q |
30 |
aacctatgaagcactaatacttgcattatctttacctattgtattg |
75 |
Q |
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| T |
24123768 |
aacctatgaagcactaatatttgcattgtcttcacctattgtattg |
24123723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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