View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0845_low_6 (Length: 475)
Name: NF0845_low_6
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 48310222 - 48310658
Alignment:
| Q |
30 |
gttaaaccagaattatattataaatataatttaatgaattcaaatagaaatagacgacatacttgagtttcaagaagttttttgacactagaagcacatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48310222 |
gttaaaccagaattatattataaatataatttaatgaattcaaatagaaatagacgacatacttgagtttcaagaagttttttgacactagaagcacatc |
48310321 |
T |
|
| Q |
130 |
cctcacacatcattccctgaacatgaagaacaacatcagcatcattgttatggaggtggtccccactggaagtagttgaggttgaacaacaccgcaatgg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
48310322 |
cctcacacatcattccctgaacatgaagaacaacatcagcatcattgttatggaggtggtccccactggaagtagttgaggctgaacaacaccgtaatgg |
48310421 |
T |
|
| Q |
230 |
caaaacgcgatgatgatggttcagtttcaccagctgttgttggatgcctctgtctctgccaaaattgagattcagaggtttcaaaaacatcttttgcatc |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
48310422 |
caaaacgcgatgatgatggttcagcttcagcagctgctgttggatgcctctgtctctgccaaaatttagattcagaggtttcaaaaacatcttttgcgtc |
48310521 |
T |
|
| Q |
330 |
acaacagaatgagaatccattcttgttggaatttgaagtacaagaatcgaagaacaagaagatgatgatgacatcattcaagaccaatcttattcctgtc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48310522 |
acaacagaatgagaatccattcttgttggaatttgaagtgcaagaatcgaagaacaagaagatgatgatgacatcattcaagaccaatcttgttcctgtc |
48310621 |
T |
|
| Q |
430 |
caattattattttagctctttttcttaacagaataat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48310622 |
caattattattttagctctttttcttaacaaaataat |
48310658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1640 times since January 2019
Visitors: 6145