View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_8 (Length: 451)

Name: NF0845_low_8
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_8
NF0845_low_8
[»] chr6 (15 HSPs)
chr6 (29-438)||(2088182-2088592)
chr6 (33-278)||(2097733-2097986)
chr6 (33-278)||(2106220-2106475)
chr6 (156-272)||(2041895-2042016)
chr6 (185-278)||(2054007-2054100)
chr6 (185-263)||(2047446-2047524)
chr6 (71-278)||(2136276-2136485)
chr6 (387-440)||(2098319-2098371)
chr6 (35-87)||(2053846-2053898)
chr6 (37-85)||(2062385-2062433)
chr6 (56-107)||(2036759-2036810)
chr6 (163-201)||(2082466-2082504)
chr6 (37-90)||(2047292-2047345)
chr6 (194-263)||(2058127-2058196)
chr6 (390-438)||(2065558-2065606)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 29 - 438
Target Start/End: Original strand, 2088182 - 2088592
Alignment:
Q  29 attgttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactt-actca 127  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2088182 attgttgagtttgatggcgcatcgcgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactca 2088281  T
Q  128 acaattcatctgagctttatattatatgttatttgtaaaatgtagctaactcttatgtttctttgtagctctatcgattccgtgagggattgggctacca 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  2088282 acaattcatctgagctttatattatatgttatttataaaatgtagctaacccttatgtttctttgtagctctatcgattccgtgaaggattaggctacca 2088381  T
Q  228 aacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagccatccgaaaaggatatcatcacatcgctatcaaaggggactctgagcta 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088382 aacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagccatccgaaaaggatatcatcacatcgctatcaaaggggactctgagcta 2088481  T
Q  328 gttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgttattgg 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088482 gttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgttattgg 2088581  T
Q  428 ttttgcaacag 438  Q
    |||||||||||    
T  2088582 ttttgcaacag 2088592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 2097733 - 2097986
Alignment:
Q  33 ttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaacttact-caacaa 131  Q
    ||||||||||||| ||| || | || |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| | ||||  | ||||||    
T  2097733 ttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtctggtatctacttggtgcaacaa 2097832  T
Q  132 ttcatctgagctttatattatatg--ttatttgtaaaatgtagct-----aactcttatgtttctttgtagctctatcgattccgtgagggattgggcta 224  Q
    ||||| |   | ||||||||||    |||||| ||||||||||||     ||||||||||||||||||||||||||||||||||| || ||| | || ||    
T  2097833 ttcatttagacattatattatactatttatttataaaatgtagctaagctaactcttatgtttctttgtagctctatcgattccgcgaaggacttggtta 2097932  T
Q  225 ccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 278  Q
     ||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  2097933 tcaaacaaataatgttgctgagtatcgcgcattgattttaggactgaaacaagc 2097986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 2106220 - 2106475
Alignment:
Q  33 ttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaacttact-caacaa 131  Q
    ||||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| | ||||  | ||||||    
T  2106220 ttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtctggtatctactttgtgcaacaa 2106319  T
Q  132 ttcatctgagctttatattatatg--ttatttgtaaaatgtagctaa-----ctcttat--gtttctttgtagctctatcgattccgtgagggattgggc 222  Q
    ||||| ||  | ||||||||||    |||||| ||||||||||||||     |||||||  |||||||||||||||||||||||||| || ||| | ||     
T  2106320 ttcatttggacattatattatactatttatttataaaatgtagctaagctaactcttatatgtttctttgtagctctatcgattccgcgaaggacttggt 2106419  T
Q  223 taccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 278  Q
    || |||||||||||||||||||||||||| ||  ||||||||||| ||||||||||    
T  2106420 tatcaaacaaataatgttgctgagtatcgtgcactgattttaggactgaaacaagc 2106475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 2041895 - 2042016
Alignment:
Q  156 ttatttgtaaaatgtagctaactcttatgtttctttg-----tagctctatcgattccgtgagggattgggctaccaaacaaataatgttgctgagtatc 250  Q
    |||||| |||||||||||||||||||||||||||||      ||||| |||| |||||| || ||| ||||||| |||||||||||||||||||||||||    
T  2041895 ttatttataaaatgtagctaactcttatgtttcttttcttcatagctatatcaattccgagaaggactgggctatcaaacaaataatgttgctgagtatc 2041994  T
Q  251 gcgctttgattttaggaatgaa 272  Q
    |||||||||| |||||| ||||    
T  2041995 gcgctttgatcttaggattgaa 2042016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 2054007 - 2054100
Alignment:
Q  185 tttctttgtagctctatcgattccgtgagggattgggctaccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 278  Q
    |||||| | ||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||    
T  2054007 tttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgctgagtaccgcgctttgatattgggactgaaacaagc 2054100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 2047446 - 2047524
Alignment:
Q  185 tttctttgtagctctatcgattccgtgagggattgggctaccaaacaaataatgttgctgagtatcgcgctttgatttt 263  Q
    |||||||  ||||||||||||||||||| ||| ||||||| ||||||||||| | |||||||||||| ||||| |||||    
T  2047446 tttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacgctgctgagtatcgtgctttaatttt 2047524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 278
Target Start/End: Complemental strand, 2136485 - 2136276
Alignment:
Q  71 gctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaacttact-caacaattcatctgagctttatattatatg-ttatttgtaaaat 168  Q
    ||||||||||||||| ||||||  |||||| |||||| | ||||| | ||||  | ||||||||||| ||   |||||||||| |  |||||| ||||||    
T  2136485 gctggtgcaggagctttactgctatctgaagatgggagtctggtatctactttatgcaacaattcatttggattttatattatttaattatttataaaat 2136386  T
Q  169 gtagctaactcttatgtttctttgtagctctatcgattccgtgagggattgggctaccaaacaaataatgttgctgagtatcgcgctttgattttaggaa 268  Q
    ||||  ||  ||||||||||||||||| ||||| |||| || || ||||||||  | | |||| | || |  ||||||||||| || |||||||||||      
T  2136385 gtaggcaatgcttatgtttctttgtagttctatggatttcgcgaaggattggggaatctaacacaaaaggaggctgagtatcgagcattgattttaggtc 2136286  T
Q  269 tgaaacaagc 278  Q
    ||||||||||    
T  2136285 tgaaacaagc 2136276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 2098319 - 2098371
Alignment:
Q  387 catttttcttttctaaacaatatactaagatatgttattggttttgcaacagct 440  Q
    ||||||||||||||||||||| ||| || |||||||||| ||||||||||||||    
T  2098319 catttttcttttctaaacaatttaccaacatatgttatt-gttttgcaacagct 2098371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 2053846 - 2053898
Alignment:
Q  35 gagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctat 87  Q
    ||||||||||| |||||   ||||||||| |||||||||||||||||||||||    
T  2053846 gagtttgatggtgcatcgattggaaatcctggaccagctggtgcaggagctat 2053898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 2062385 - 2062433
Alignment:
Q  37 gtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagct 85  Q
    ||||||||| |||||  |||||||||| |||||||||||||||||||||    
T  2062385 gtttgatggtgcatcaggtggaaatcctggaccagctggtgcaggagct 2062433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 2036759 - 2036810
Alignment:
Q  56 ggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatggga 107  Q
    |||||||| |||||||||||||| ||||| ||||||||| ||||| ||||||    
T  2036759 ggaaatcctggaccagctggtgctggagcaatactgcgtgctgaagatggga 2036810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 2082466 - 2082504
Alignment:
Q  163 taaaatgtagctaactcttatgtttctttgtagctctat 201  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  2082466 taaaatgtagccaactcttatgttcctttgtagctctat 2082504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 2047292 - 2047345
Alignment:
Q  37 gtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatact 90  Q
    ||||||||| |||||  |||| ||||| ||||||||||||||||||||| ||||    
T  2047292 gtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgtact 2047345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 2058127 - 2058196
Alignment:
Q  194 agctctatcgattccgtgagggattgggctaccaaacaaataatgttgctgagtatcgcgctttgatttt 263  Q
    ||||||||||||||||||| ||| ||||| | || ||| ||| |  |||||||||||||||||| |||||    
T  2058127 agctctatcgattccgtgaaggactgggcgatcagacagatagttctgctgagtatcgcgctttaatttt 2058196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 2065558 - 2065606
Alignment:
Q  390 ttttcttttctaaacaatatactaagatatgttattggttttgcaacag 438  Q
    |||||||| ||||||||| ||| || |||||||||| ||||||||||||    
T  2065558 ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacag 2065606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 155 times since January 2019
Visitors: 6125