View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_10 (Length: 618)

Name: NF0846_high_10
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_10
NF0846_high_10
[»] chr3 (5 HSPs)
chr3 (403-613)||(47598508-47598717)
chr3 (30-337)||(47598783-47599082)
chr3 (442-553)||(31203325-31203438)
chr3 (221-250)||(30484880-30484909)
chr3 (285-313)||(47598807-47598835)
[»] chr5 (5 HSPs)
chr5 (403-546)||(8117175-8117319)
chr5 (445-553)||(28461395-28461504)
chr5 (220-253)||(30874635-30874668)
chr5 (289-325)||(2328898-2328934)
chr5 (298-334)||(8117385-8117421)
[»] chr1 (9 HSPs)
chr1 (416-583)||(25711018-25711186)
chr1 (403-548)||(36496838-36496982)
chr1 (410-553)||(50740760-50740901)
chr1 (443-553)||(19635608-19635719)
chr1 (219-253)||(47463666-47463700)
chr1 (220-253)||(33858165-33858198)
chr1 (220-253)||(33922725-33922758)
chr1 (220-253)||(19636115-19636148)
chr1 (217-253)||(44288056-44288092)
[»] chr6 (4 HSPs)
chr6 (405-548)||(31462652-31462797)
chr6 (443-548)||(15584904-15585010)
chr6 (286-334)||(31462532-31462580)
chr6 (217-253)||(31462464-31462500)
[»] chr8 (7 HSPs)
chr8 (403-527)||(25029387-25029511)
chr8 (403-536)||(27708128-27708260)
chr8 (466-548)||(13341354-13341437)
chr8 (220-253)||(5124565-5124598)
chr8 (220-253)||(27707956-27707989)
chr8 (220-253)||(25029659-25029692)
chr8 (223-252)||(32452458-32452487)
[»] scaffold0172 (2 HSPs)
scaffold0172 (403-548)||(30935-31081)
scaffold0172 (285-334)||(30818-30867)
[»] chr4 (7 HSPs)
chr4 (442-561)||(3124946-3125066)
chr4 (442-573)||(52643112-52643244)
chr4 (220-259)||(11388876-11388915)
chr4 (217-253)||(3125241-3125277)
chr4 (407-487)||(8367776-8367856)
chr4 (403-467)||(51850650-51850714)
chr4 (221-253)||(54857083-54857115)
[»] chr7 (6 HSPs)
chr7 (449-553)||(13726140-13726245)
chr7 (403-488)||(19835163-19835248)
chr7 (442-488)||(29452966-29453012)
chr7 (217-253)||(24375589-24375625)
chr7 (220-253)||(19423935-19423968)
chr7 (286-334)||(13726361-13726409)
[»] chr2 (7 HSPs)
chr2 (445-546)||(33803721-33803823)
chr2 (445-546)||(33808203-33808305)
chr2 (445-561)||(12733032-12733148)
chr2 (220-334)||(29264342-29264457)
chr2 (444-548)||(45710025-45710129)
chr2 (287-334)||(35819292-35819339)
chr2 (223-253)||(36421972-36422002)
[»] scaffold0252 (1 HSPs)
scaffold0252 (220-254)||(16648-16682)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 403 - 613
Target Start/End: Complemental strand, 47598717 - 47598508
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  47598717 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttaaaaaatgttagggtttacgaaattctataaatgccctaaa 47598618  T
Q  503 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcactgttatacaactatttgat 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47598617 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatattggatgaaacggtcgttatc-gctccgcactgttatacaactatttgat 47598519  T
Q  603 tctgtgctgct 613  Q
    || ||||||||    
T  47598518 tccgtgctgct 47598508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 47599082 - 47598783
Alignment:
Q  30 gtattatcttgttaataaaaaagaaaatggtcctattgttatgattcttactcatgcccggtgcaaaagagcagggttacctttcgaccataatagtcaa 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||    
T  47599082 gtattatcttgttaatgaaaaagaaaatggtcctattgttatgattcttactcatgccaagtgcaaaagagcaggtttacctttcgaccataata-tcaa 47598984  T
Q  130 tcccgaacagcggtggattgtggtcgacttcaaaagtgggatagcgttaatggtatgataaataacagttactaaannnnnnnnnngtttgacaaattac 229  Q
    ||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |            ||| |||||||||    
T  47598983 tcccgaataacggtggatagtggtcgacttcaaaagtgggatagtgttaatggtatgataaatagcagttactga------ttttttttttacaaattac 47598890  T
Q  230 atgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnncttatatttaatattatattaaatataagattcaaatctcacgag 329  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||           |||||||||||||| ||||||||||||||| ||||||||||||||    
T  47598889 atgaataatactacaaaatataaaataaaacatatatttctcaa-aaaaaaaaaacttatatttaatataatattaaatataagactcaaatctcacgag 47598791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 553
Target Start/End: Complemental strand, 31203438 - 31203325
Alignment:
Q  442 gtgagaagagagaaaat-gttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttccta 539  Q
    |||||| |||||||||  |||||||||||| ||||||||| |||||||  ||||  | | |||||| |||| ||||| | || |||||||||||||||||    
T  31203438 gtgagacgagagaaaagagttgaaaaatgtcagggtttacaaaatcctcaaaatatctttaaaaaggttttaaaaattgagtcaatttaaaaatttccta 31203339  T
Q  540 ttaaaatcagatag 553  Q
    ||||||||| ||||    
T  31203338 ttaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 30484880 - 30484909
Alignment:
Q  221 acaaattacatgaataatactataaagtat 250  Q
    ||||||||||||||||||||||||||||||    
T  30484880 acaaattacatgaataatactataaagtat 30484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 47598807 - 47598835
Alignment:
Q  285 cttatatttaatattatattaaatataag 313  Q
    |||||||||||||||||||||||||||||    
T  47598807 cttatatttaatattatattaaatataag 47598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 403 - 546
Target Start/End: Complemental strand, 8117319 - 8117175
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-a 501  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |    
T  8117319 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaatgccctaaa 8117220  T
Q  502 aaagatttttaaaatagggttaatttaaaaatttcctattaaaat 546  Q
    |||| |||| |||||||||| |||||  |||||||||| ||||||    
T  8117219 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaat 8117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 28461395 - 28461504
Alignment:
Q  445 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaat-agggttaatttaaaaatttcctattaa 543  Q
    |||||||| |||  ||||||||| | |||||||||| |||||||  ||||||| |||||| | ||||||||  || || ||||||||||||||||| |||    
T  28461395 agaagagaaaaagagttgaaaaacgatagggtttacaaaatcctcaaaatgccttaaaaaaagttttaaaaacagagtcaatttaaaaatttcctactaa 28461494  T
Q  544 aatcagatag 553  Q
    ||||| ||||    
T  28461495 aatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 30874635 - 30874668
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||||||||||    
T  30874635 gacaaattacatgaataatactataaagtataaa 30874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 2328898 - 2328934
Alignment:
Q  289 tatttaatattatattaaatataagattcaaatctca 325  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  2328898 tatttaatattaaattaaatataatattcaaatctca 2328934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 8117421 - 8117385
Alignment:
Q  298 ttatattaaatataagattcaaatctcacgagacatt 334  Q
    ||||||||||||||| | |||||||||||||||||||    
T  8117421 ttatattaaatataacactcaaatctcacgagacatt 8117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 416 - 583
Target Start/End: Original strand, 25711018 - 25711186
Alignment:
Q  416 atagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaa 514  Q
    |||||||||||| ||||| ||||   ||||||||||||||||  |||||||||||||||||||||||||||||  |||| |||| |||||| |||| |||    
T  25711018 atagaagagtgtgtttcacggcacaggtgagaagagagaaaaacttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaaaggttttaaaa 25711117  T
Q  515 atagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcac 583  Q
    ||||||| |||||  |||||||||| |||||||| || |||| |||| ||| || |||| |||||||||    
T  25711118 atagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgctccgcac 25711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 548
Target Start/End: Complemental strand, 36496982 - 36496838
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaa- 501  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||  ||||||||| ||||||||||||| ||||||||||||||||  |||||| ||||     
T  36496982 cataagatagaagatagaagagtgtgtttcgcggcacatgtgag--gagagaaaaagttgaaaaatgttggggtttacgaaatcctcaaaatgctctaat 36496885  T
Q  502 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 548  Q
    |||  |||| ||||||||||||||||| |||||||||| ||||||||    
T  36496884 aaatgttttaaaaatagggttaatttagaaatttcctactaaaatca 36496838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 410 - 553
Target Start/End: Complemental strand, 50740901 - 50740760
Alignment:
Q  410 tagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatc-ctataaatgccctaaaaagatt 508  Q
    ||||| |||||||||||| ||||  ||||   |||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  50740901 tagaagatagaagagtgtgtttcgcggcaaatgtgagaagagagaaa--gttgaaaaatgttagggtttacgaaatctcta-aaatgccctaaaaaggtt 50740805  T
Q  509 tttaaaatagggttaatttaaaaatttcctattaaaatcagatag 553  Q
    || |||||||| | |||||  |||||||||| |||||||| ||||    
T  50740804 ttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 443 - 553
Target Start/End: Complemental strand, 19635719 - 19635608
Alignment:
Q  443 tgagaagagagaaaatgttgaaaaatgttagg-gtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctatt 541  Q
    ||||||||||||||  |||||||||||||| | ||||| |||||||   ||||||||||||||| |||| |||||||||| |||||  |||||||||| |    
T  19635719 tgagaagagagaaagagttgaaaaatgttaagagtttaagaaatccccaaaatgccctaaaaaggttttaaaaatagggtcaatttggaaatttcctact 19635620  T
Q  542 aaaatcagatag 553  Q
    ||||||| ||||    
T  19635619 aaaatcaaatag 19635608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 47463700 - 47463666
Alignment:
Q  219 tgacaaattacatgaataatactataaagtataaa 253  Q
    |||||||||||||||||||||||||||||||||||    
T  47463700 tgacaaattacatgaataatactataaagtataaa 47463666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 33858165 - 33858198
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||||||||||    
T  33858165 gacaaattacatgaataatactataaagtataaa 33858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 33922758 - 33922725
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||||||||||    
T  33922758 gacaaattacatgaataatactataaagtataaa 33922725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 19636148 - 19636115
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||| ||||||||||||    
T  19636148 gacaaattacatgaataatacgataaagtataaa 19636115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 44288092 - 44288056
Alignment:
Q  217 tttgacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  44288092 tttgacaaattacataaataatactataaattataaa 44288056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 405 - 548
Target Start/End: Original strand, 31462652 - 31462797
Alignment:
Q  405 taagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct--aaa 502  Q
    |||| ||||| |||||||||||| ||||| ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||  |||    
T  31462652 taaggtagaagatagaagagtgtgtttcacggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaa 31462751  T
Q  503 aagatttttaaaatagggttaatttaaaaatttcctattaaaatca 548  Q
    ||| |||| |||||||| | |||||| |||||||||| ||||||||    
T  31462752 aaggttttaaaaataggctcaatttagaaatttcctactaaaatca 31462797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 548
Target Start/End: Original strand, 15584904 - 15585010
Alignment:
Q  443 tgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctatt 541  Q
    |||||||||| |||  |||||| ||||||||||||||||||||||   ||||||||| |||||| |||| |||||||||| ||||| ||||||||||| |    
T  15584904 tgagaagagaaaaagagttgaataatgttagggtttacgaaatccataaaatgccctaaaaaagtttttaaaaatagggtcaatttgaaaatttcctact 15585003  T
Q  542 aaaatca 548  Q
    |||||||    
T  15585004 aaaatca 15585010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 31462532 - 31462580
Alignment:
Q  286 ttatatttaatattatattaaatataagattcaaatctcacgagacatt 334  Q
    ||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  31462532 ttatatttaatataaaattaaatataacactcaaatctcacgagacatt 31462580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 31462464 - 31462500
Alignment:
Q  217 tttgacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  31462464 tttgacaaactacatgaataatactataaggtataaa 31462500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 527
Target Start/End: Complemental strand, 25029511 - 25029387
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 502  Q
    |||||||||||| |||||||||||| ||||  |||    |||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||||||    
T  25029511 cataagatagaagatagaagagtgtgtttcgcggctcaggtgagaagagagaaaaagttgaaaaatgttagggtttacaaaatcctcaaaatgccctaaa 25029412  T
Q  503 aagatttttaaaatagggttaattt 527  Q
    ||| |||| |||||||||| |||||    
T  25029411 aaggttttaaaaatagggtcaattt 25029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 403 - 536
Target Start/End: Original strand, 27708128 - 27708260
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 501  Q
    |||||||||||| |||||| ||||| ||||  ||||  |||||   ||||||||| |||||||||| ||||||||| |||||||||  ||||||||| ||    
T  27708128 cataagatagaagatagaatagtgtgtttcgcggcacaagtgac--gagagaaaaagttgaaaaatattagggtttgcgaaatcctcaaaatgccctaaa 27708225  T
Q  502 aaagatttttaaaatagggttaatttaaaaatttc 536  Q
    |||| |||| |||||||||| |||||  |||||||    
T  27708226 aaaggttttaaaaatagggtcaatttggaaatttc 27708260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 466 - 548
Target Start/End: Complemental strand, 13341437 - 13341354
Alignment:
Q  466 aatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 548  Q
    ||||||||||||||| ||||||   ||||||||| |||||| |||| |||||||||| |||||  |||||||||| ||||||||    
T  13341437 aatgttagggtttaccaaatccccaaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatca 13341354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 5124598 - 5124565
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||||||||||    
T  5124598 gacaaattacatgaataatactataaagtataaa 5124565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 27707956 - 27707989
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||||||||||    
T  27707956 gacaaattacatgaataatactataaagtataaa 27707989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 25029692 - 25029659
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||| ||||||||||||||||    
T  25029692 gacaaattacatgaatattactataaagtataaa 25029659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 32452458 - 32452487
Alignment:
Q  223 aaattacatgaataatactataaagtataa 252  Q
    ||||||||||||||||||||||||||||||    
T  32452458 aaattacatgaataatactataaagtataa 32452487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 548
Target Start/End: Original strand, 30935 - 31081
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 501  Q
    |||||||||||| |||||||||||||||||  ||||   |||||||||||||||| ||||||||||||| | ||||||||||||||  ||||| ||| ||    
T  30935 cataagatagaagatagaagagtgtatttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttggcgtttacgaaatcctcaaaatgtcctaaa 31034  T
Q  502 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 548  Q
    |||  |||| |||||| ||| ||||| ||||||||||| ||||||||    
T  31035 aaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatca 31081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 30818 - 30867
Alignment:
Q  285 cttatatttaatattatattaaatataagattcaaatctcacgagacatt 334  Q
    |||||||||||||| | ||||||||||| | |||||||||| ||||||||    
T  30818 cttatatttaatataaaattaaatataacactcaaatctcatgagacatt 30867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 442 - 561
Target Start/End: Complemental strand, 3125066 - 3124946
Alignment:
Q  442 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctat 540  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||  |||||||||| |||||||||| ||||||| || ||||| ||||||||||      
T  3125066 gtgagaagagagaaaaagttaaaaaatgttagggtttacgaattcctcaaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgc 3124967  T
Q  541 taaaatcagatagtggatgaa 561  Q
    |||||||| ||||||| ||||    
T  3124966 taaaatcaaatagtggctgaa 3124946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 573
Target Start/End: Complemental strand, 52643244 - 52643112
Alignment:
Q  442 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctat 540  Q
    ||||||| |||||||  |||||||| ||||||||||||| ||||||   |||||| || |||||| |||| |||||||||| |||||  |||||||||      
T  52643244 gtgagaatagagaaagagttgaaaagtgttagggtttacaaaatccccaaaatgctctcaaaaaggttttaaaaatagggtcaatttggaaatttccttc 52643145  T
Q  541 taaaatcagatagtggatgaaacggtcgttatc 573  Q
    |||||||| | || || |||| |||| ||||||    
T  52643144 taaaatcaaacagcggctgaagcggttgttatc 52643112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 11388876 - 11388915
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaaataaaa 259  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11388876 gacaaattacatgaataatactctaaagtataaaataaaa 11388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 3125277 - 3125241
Alignment:
Q  217 tttgacaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3125277 tttgacaaattacatgaataatactatgaagtataaa 3125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 487
Target Start/End: Complemental strand, 8367856 - 8367776
Alignment:
Q  407 agatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcc 487  Q
    |||| ||| |||||||||||| ||||||||||    | ||||||||| ||  |||||||||||||||||||||| ||||||    
T  8367856 agatggaagatagaagagtgtgtttcatggcacatctaagaagagagtaagggttgaaaaatgttagggtttacaaaatcc 8367776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 51850650 - 51850714
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaa 467  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| |||||||||    
T  51850650 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaa 51850714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 54857115 - 54857083
Alignment:
Q  221 acaaattacatgaataatactataaagtataaa 253  Q
    ||||||||||||||||||| |||||||||||||    
T  54857115 acaaattacatgaataatagtataaagtataaa 54857083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 553
Target Start/End: Complemental strand, 13726245 - 13726140
Alignment:
Q  449 gagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctattaaaatc 547  Q
    ||||||||| |||||||||||  |||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  13726245 gagagaaaaagttgaaaaatgacagggtttacgaaatcctcaaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatc 13726146  T
Q  548 agatag 553  Q
    | ||||    
T  13726145 aaatag 13726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 19835248 - 19835163
Alignment:
Q  403 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 488  Q
    |||||||||||| |||||||||||| ||||  ||||   |||| ||||||||||| |||||||||||| |||||||||||||||||    
T  19835248 cataagatagaagatagaagagtgtgtttcgcggcacaggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaatcct 19835163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 29452966 - 29453012
Alignment:
Q  442 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 488  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  29452966 gtgagaagagagaaaaagttgaaaaatgttatggtttacaaaatcct 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 24375625 - 24375589
Alignment:
Q  217 tttgacaaattacatgaataatactataaagtataaa 253  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24375625 tttgacaaattacatgaataatactataaactataaa 24375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 19423968 - 19423935
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaa 253  Q
    ||||| ||||||||||||||||||||||||||||    
T  19423968 gacaatttacatgaataatactataaagtataaa 19423935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 13726409 - 13726361
Alignment:
Q  286 ttatatttaatattatattaaatataagattcaaatctcacgagacatt 334  Q
    ||||||||||||| | ||||||||||| | |||||||||| ||||||||    
T  13726409 ttatatttaatataaaattaaatataacactcaaatctcatgagacatt 13726361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 445 - 546
Target Start/End: Original strand, 33803721 - 33803823
Alignment:
Q  445 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 543  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33803721 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33803820  T
Q  544 aat 546  Q
    |||    
T  33803821 aat 33803823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 445 - 546
Target Start/End: Original strand, 33808203 - 33808305
Alignment:
Q  445 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 543  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33808203 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33808302  T
Q  544 aat 546  Q
    |||    
T  33808303 aat 33808305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 12733032 - 12733148
Alignment:
Q  445 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 543  Q
    |||||||||||| ||||||||||||||||| ||||||||||||   ||||||||| |||||| |||| |||||| ||    ||| ||||||||||| |||    
T  12733032 agaagagagaaagtgttgaaaaatgttaggatttacgaaatccccaaaatgccctcaaaaaggttttaaaaatatgg-ccgtttgaaaatttcctactaa 12733130  T
Q  544 aatcagatagtggatgaa 561  Q
    ||||| ||||||| ||||    
T  12733131 aatcaaatagtggctgaa 12733148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 29264457 - 29264342
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnn-cttatatttaatattatattaaatataagattca 318  Q
    ||||||||||||||||||||||||||||||||||  ||   ||| ||||||||||           |||||||||||||| | ||||||||||| | |||    
T  29264457 gacaaattacatgaataatactataaagtataaacaaacttataaatttctcaacaaaaaaaaaaacttatatttaatataaaattaaatataacactca 29264358  T
Q  319 aatctcacgagacatt 334  Q
    ||||||||||||||||    
T  29264357 aatctcacgagacatt 29264342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 548
Target Start/End: Original strand, 45710025 - 45710129
Alignment:
Q  444 gagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctattaa 543  Q
    ||||||||||||||  |||||||||| |||||||||||| || ||  ||| || |||||||   ||| |||||||||| ||||| |||||||||||  ||    
T  45710025 gagaagagagaaaaatttgaaaaatgatagggtttacgatattctcaaaaagctctaaaaatgatttaaaaatagggtcaatttgaaaatttcctaccaa 45710124  T
Q  544 aatca 548  Q
    |||||    
T  45710125 aatca 45710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 35819339 - 35819292
Alignment:
Q  287 tatatttaatattatattaaatataagattcaaatctcacgagacatt 334  Q
    |||||||||||| | ||||||||||| |||||||||||| ||||||||    
T  35819339 tatatttaatataaaattaaatataacattcaaatctcatgagacatt 35819292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 36421972 - 36422002
Alignment:
Q  223 aaattacatgaataatactataaagtataaa 253  Q
    |||||||||||||||||||||||||||||||    
T  36421972 aaattacatgaataatactataaagtataaa 36422002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 16648 - 16682
Alignment:
Q  220 gacaaattacatgaataatactataaagtataaaa 254  Q
    |||||||||||||||||||||||||||||| ||||    
T  16648 gacaaattacatgaataatactataaagtacaaaa 16682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 81 times since January 2019
Visitors: 6044