View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_101 (Length: 337)
Name: NF0846_high_101
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_101 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 42945479 - 42945190
Alignment:
| Q |
48 |
ctttgtattgggttagatgtccgtccccacacnnnnnnnnnnnnccataattgaatttctagcttaataaaaatatcaactttccaaaactatttaatta |
147 |
Q |
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| T |
42945479 |
ctttgtattgggttagatgtccgtccccacacttttttctttttccataatagaatttctagcttaataaaaatatcaacttttcaaaactatttaatta |
42945380 |
T |
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| Q |
148 |
taataa-acacacaagtgttgcatgatgttagtcat---taatcatgtatttgtagtttttcaaaaataattaaaagaaatcatataaatgtagtacgag |
243 |
Q |
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| T |
42945379 |
taataacacacacaagtgttgcatgatgttagtcatcattaatcatgtatttgtagtttttcaaaaataattgaaagaaatcatataaatgtagtacgag |
42945280 |
T |
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| Q |
244 |
aatctccttttaaaataattgaata-------ttgnnnnnnnacagtgaagtaagttggtttagccattaactacttcacaatgattcat |
326 |
Q |
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| T |
42945279 |
aatctccttttaaaataattgaatattgttttttgtctctatacagtgaagtaagttggtttagccattaactacttcacaatgattcat |
42945190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 32603817 - 32603909
Alignment:
| Q |
163 |
tgttgcatgatgttagtcattaatcatgtatttgtagtttttcaaaaataattaaaagaaatcatataaatgtagtacgagaatctcctttta |
255 |
Q |
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| T |
32603817 |
tgttgcataaagttagtcattgatcatatagttgtagttctgcaaaaataattaaaaagagtcttataaatgtagtacgataatgacctttta |
32603909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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