View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_107 (Length: 327)
Name: NF0846_high_107
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_107 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 33856009 - 33855725
Alignment:
| Q |
13 |
tgagatgaatcactctttgtgatctaatatttttcattttagcttgttnnnnnnnnnnncctgtttaagatgttgcaaagagtaggaataatattaaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
33856009 |
tgagatgaatcactctttgtgatctaatatttttcattttagcttgttaaaaaaaaaaacctgtttaaggtgttgcaaagagtaggaataatattaaaat |
33855910 |
T |
|
| Q |
113 |
atccaattgaggaaaatatattattccatataggtcagcttaatcaatttagtactttctttacctttcaatcattctgcatgttacatcactcatgagc |
212 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33855909 |
atccaattgaagaaaatatattattccatatatgtcagcttaatcaatttagtactttctttacctttcaatcattctccatgttacatcactcatgagc |
33855810 |
T |
|
| Q |
213 |
tccatatctcatatttggattctttgttgtaaatacatgacacatctataaatctatatagttatatctaaaatcaatgtcgtgat |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
33855809 |
tccatatctcatatttggattctttgttgtaaatgcatgacacgtc-ataaatctatatagttatatctaaaatcaatgtcgtgat |
33855725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 33866544 - 33866440
Alignment:
| Q |
148 |
cagcttaatcaatttagtactttctttacctttcaatcattctgcatgttacatcactcatgagctccatatctcatatttggattctttgttgtaaata |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
33866544 |
cagcttaatcaatttagtactttctttacctttcaaccattccccatattacatcactcataagctccatctctcatatttgggttctttgttgtaaatg |
33866445 |
T |
|
| Q |
248 |
catga |
252 |
Q |
| |
|
||||| |
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| T |
33866444 |
catga |
33866440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 13851696 - 13851742
Alignment:
| Q |
14 |
gagatgaatcactctttgtgatctaatatttttcattttagcttgtt |
60 |
Q |
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||||||||||||||||||||||||||||| ||| ||||| ||||||| |
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|
| T |
13851696 |
gagatgaatcactctttgtgatctaatatattttattttggcttgtt |
13851742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22727118 - 22727162
Alignment:
| Q |
13 |
tgagatgaatcactctttgtgatctaatatttttcattttagctt |
57 |
Q |
| |
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|||||| ||||||||||||||||||||||| || ||||||||||| |
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|
| T |
22727118 |
tgagatcaatcactctttgtgatctaatatattccattttagctt |
22727162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 38085034 - 38084988
Alignment:
| Q |
14 |
gagatgaatcactctttgtgatctaatatttttcattttagcttgtt |
60 |
Q |
| |
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|||||||||||||||||||||| |||||| || ||||||| |||||| |
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|
| T |
38085034 |
gagatgaatcactctttgtgatataatatattccattttaccttgtt |
38084988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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