View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_114 (Length: 316)
Name: NF0846_high_114
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_114 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 25141207 - 25140907
Alignment:
| Q |
15 |
tataatagagaaccataataaacttcaattataaccatatattccaccatagctagatagaatgtacctttcattgcggttaagacgagctccaagatag |
114 |
Q |
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| T |
25141207 |
tataatagagaaccataataaacatcaattataaccatatattccacc-tagctagatagaatgtacctttcattgcggttaagacgagctccgagatag |
25141109 |
T |
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| Q |
115 |
aacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcataccatctcgagcaaaattgattccaagagctg |
214 |
Q |
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| T |
25141108 |
aaggccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcatgccgtctcgagcaaaattgattccaagagctg |
25141009 |
T |
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| Q |
215 |
gctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaacaaac |
314 |
Q |
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| T |
25141008 |
gctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaacaaac |
25140909 |
T |
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| Q |
315 |
ac |
316 |
Q |
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| T |
25140908 |
ac |
25140907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 306
Target Start/End: Original strand, 4790030 - 4790258
Alignment:
| Q |
78 |
gtacctttcattgcggttaagacgagctccaagatagaacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacgg |
177 |
Q |
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| T |
4790030 |
gtacctttcgttgcggttaagacgagctccaagataaaaagccacagaaagcaaccatgaatcactgtgcacagcaactagagaaagccagtccctacgg |
4790129 |
T |
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| Q |
178 |
ttcataccatctcgagcaaaattgattccaagagctggctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattat |
277 |
Q |
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| T |
4790130 |
ttcatgccatcccttgcaaagttgattccaagggctggctctggaagctcaggtggaacttcctcagcaggaagagtcacttcccatgattcatttgtat |
4790229 |
T |
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| Q |
278 |
gaccatagaggcacaaattatccttatct |
306 |
Q |
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| T |
4790230 |
gtccatagagacacaaattgtccttatct |
4790258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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