View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_115 (Length: 315)
Name: NF0846_high_115
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_115 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 3464341 - 3464615
Alignment:
| Q |
31 |
tagtcaaatggataacttttaagattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaattataccaag |
130 |
Q |
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| T |
3464341 |
tagtcaaatggatatcgtttaagattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaattataccaag |
3464440 |
T |
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| Q |
131 |
aatgaatgtggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464441 |
aatgaatgtggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatc |
3464540 |
T |
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| Q |
231 |
ccccttccgatatggtcattgtttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3464541 |
ccccttccgatatggtcattgtttgcttgggtgctacgattagagtcacaatcattccacgaagccatcttcatc |
3464615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 3454009 - 3454222
Alignment:
| Q |
33 |
gtcaaatggataacttttaagattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaatta-------ta |
125 |
Q |
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|||||||||||| | |||||||||| | ||| |||||||| |||||||||||||| | ||||| ||||| | | |||||||||||||||| || |
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| T |
3454009 |
gtcaaatggataccgtttaagattattcccagcaagaaattgatcttgtctttgggactaattcagaggttacatcattcgtaattaattaatgatagta |
3454108 |
T |
|
| Q |
126 |
ccaagaatgaatgtggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgatta----actgcttaaacccaccactaaccaag |
221 |
Q |
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| T |
3454109 |
tgaagaatgagtggggtcgaagtctttgcaaaggtgcaagcagtatcttttttcacaagaaacttagttaatgcattgcttaaacccaccaccaacttag |
3454208 |
T |
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| Q |
222 |
cagaggatccccct |
235 |
Q |
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| T |
3454209 |
cggaggatccccct |
3454222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 3454439 - 3454473
Alignment:
| Q |
256 |
cttgggtgctacgattagagtcacaatcgttccac |
290 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
3454439 |
cttgggtgctacgattagagtcacaatcattccac |
3454473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 4039406 - 4039686
Alignment:
| Q |
31 |
tagtcaaatggataacttttaagatt----agttccaacaagaaatagatcttgtctttggtattaattatgag--gtcatagcattcgtaattaattat |
124 |
Q |
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|||||||||||||| | ||||||||| ||| ||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||| |
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| T |
4039406 |
tagtcaaatggataccatttaagattgattagtcccaacaagaaatagatcttgtataa--tattaattctgagaggtcatagcattcgtaattaattat |
4039503 |
T |
|
| Q |
125 |
accaagaatgaatgtggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcag |
224 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039504 |
accaagaatgaatatggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcag |
4039603 |
T |
|
| Q |
225 |
aggatcccccttccg--atatggtcattgtttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatc |
305 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
4039604 |
aggatcccccttccgatatatggtcattgtttgcttgggtgctatgattagagtcacaatcattccacgaagccatcttcatc |
4039686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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