View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_119 (Length: 310)
Name: NF0846_high_119
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_119 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 32643235 - 32643512
Alignment:
| Q |
30 |
aaaatcatcatcctactttatatcatacggtagttttatattattgtggttcatgtatacctcccaagcataaatacattgcatcagagagcgttgcata |
129 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32643235 |
aaaatcatcatcatactttatatcatatggtagttttatata---gtggttcatgtatacctcccaagcataaatacattgcatcagagagcgttgtata |
32643331 |
T |
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| Q |
130 |
tataaatatggtattttactaatataaaaccacaactcgccacatctcactttcttctaacgtccctttaacctgtcatcatcatggataggtctttgtt |
229 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
32643332 |
tataaatatggtattttactaatataaaaccataactcgccacatctcactttcttctaacgtccctttaacctgtcatcatcatggataagcctttgtt |
32643431 |
T |
|
| Q |
230 |
cgtcacacagactcctatcaccactgatgagcttaacattttttaccaaattgatcgtgagctattttgttttttgatctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643432 |
tgtcacacagactcctatcaccactgatgagcttaaccttttttaccaaattgatcgtgagctattttgttttttgatctt |
32643512 |
T |
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