View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_121 (Length: 309)
Name: NF0846_high_121
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_121 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 42862149 - 42862414
Alignment:
| Q |
13 |
tgatatgaaaaccaacacagcatctggaaaacactttgagtccaaaatcaatgaagaatattcaaaaggagtcaacctcatgaccaagatgtcgtccatt |
112 |
Q |
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| T |
42862149 |
tgataagaaaaccaacacagcatctggaaaacacattgagtccaaaatcaatgaagaatattcaaaaggagtcaacctcatgaccaagatgtcgtccatt |
42862248 |
T |
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| Q |
113 |
gaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatc |
212 |
Q |
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| T |
42862249 |
gaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatc |
42862348 |
T |
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| Q |
213 |
atttacattaacttagatttcataagaacaatttgtaattctattgcattttaggttgtgttccct |
278 |
Q |
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| T |
42862349 |
acttacattaacttagatttcataagaacaatttgtaattctattgcattttaggttgtgttccct |
42862414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 27574951 - 27575170
Alignment:
| Q |
30 |
cagcatctggaaaacactttgagtccaaaatcaatgaagaatattcaaaaggagtcaacctcatgaccaagatgtcgtccattgaaactgaatatcattc |
129 |
Q |
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| T |
27574951 |
cagcatctggcaaagacattgagtccaaaatcaatgaggaatgtccgaaaggtgcgagtctcatgaccaagatgtcatccgttgaacctgtctatcactt |
27575050 |
T |
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| Q |
130 |
tgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatcatttacattaacttaga |
229 |
Q |
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| T |
27575051 |
tgctcttgccaagaaagcctctttagctgaagattgggccaacattcaagcttgtttcctttcaaaatctatataatttaaccctttaaattaacttaga |
27575150 |
T |
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| Q |
230 |
tttcataagaacaatttgta |
249 |
Q |
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| T |
27575151 |
ttttatcagaacaatttgta |
27575170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 7744939 - 7745046
Alignment:
| Q |
89 |
ctcatgaccaagatgtcgtccattgaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttct |
188 |
Q |
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||||||| ||||||||| ||||||||| ||| ||||| | |||||| | |||||||||| |||||||| |||||||| | |||||||||||||| |
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| T |
7744939 |
ctcatgatcaagatgtcatccattgaagttgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcc |
7745038 |
T |
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| Q |
189 |
ttccaaaa |
196 |
Q |
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| T |
7745039 |
tttcaaaa |
7745046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 12543144 - 12543037
Alignment:
| Q |
89 |
ctcatgaccaagatgtcgtccattgaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttct |
188 |
Q |
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||||||| ||||||||| ||||||||| ||| ||||| | |||||| | |||||||||| |||||||| |||||||| | |||||||||||||| |
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| T |
12543144 |
ctcatgatcaagatgtcatccattgaagctgtctatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcc |
12543045 |
T |
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| Q |
189 |
ttccaaaa |
196 |
Q |
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|| ||||| |
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| T |
12543044 |
tttcaaaa |
12543037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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