View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_133 (Length: 285)
Name: NF0846_high_133
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_133 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 52242522 - 52242325
Alignment:
| Q |
47 |
ggcctcctccgcctgagagcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaaagatttctttgatgatatatttggagg |
146 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52242522 |
ggcctcctccgcctgagagcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaaagatttttttgatgatatatttggagg |
52242423 |
T |
|
| Q |
147 |
agaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttgcttcatctc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52242422 |
agaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttgcttcttctc |
52242325 |
T |
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