View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_136 (Length: 282)

Name: NF0846_high_136
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_136
NF0846_high_136
[»] chr8 (25 HSPs)
chr8 (50-120)||(24946113-24946182)
chr8 (184-226)||(11223883-11223925)
chr8 (184-226)||(22852863-22852905)
chr8 (184-226)||(27836185-27836227)
chr8 (184-226)||(45101401-45101443)
chr8 (237-282)||(9550433-9550478)
chr8 (50-119)||(30925542-30925613)
chr8 (52-119)||(7325826-7325895)
chr8 (187-222)||(7559327-7559362)
chr8 (187-226)||(7596918-7596957)
chr8 (187-226)||(21273737-21273776)
chr8 (184-226)||(7279979-7280021)
chr8 (50-119)||(11223747-11223818)
chr8 (184-226)||(11879514-11879556)
chr8 (184-226)||(11896930-11896972)
chr8 (184-226)||(32174959-32175001)
chr8 (184-226)||(40842019-40842061)
chr8 (237-282)||(31806299-31806344)
chr8 (237-282)||(39153708-39153753)
chr8 (237-282)||(40719669-40719714)
chr8 (237-281)||(9048343-9048387)
chr8 (237-281)||(22767132-22767176)
chr8 (237-281)||(40604731-40604775)
chr8 (234-282)||(43602449-43602497)
chr8 (50-118)||(45101509-45101579)
[»] chr1 (22 HSPs)
chr1 (50-120)||(30631733-30631805)
chr1 (52-120)||(35846209-35846279)
chr1 (184-226)||(31427981-31428023)
chr1 (184-226)||(50226903-50226945)
chr1 (237-282)||(18541077-18541122)
chr1 (238-281)||(15182610-15182653)
chr1 (58-119)||(30439362-30439423)
chr1 (184-226)||(49425743-49425784)
chr1 (237-282)||(3606120-3606165)
chr1 (237-282)||(27810273-27810318)
chr1 (50-106)||(48872839-48872895)
chr1 (50-119)||(49453592-49453660)
chr1 (237-282)||(50017449-50017494)
chr1 (237-282)||(50141961-50142006)
chr1 (194-226)||(5309074-5309106)
chr1 (237-281)||(12708090-12708134)
chr1 (237-281)||(12713544-12713588)
chr1 (237-281)||(12717635-12717679)
chr1 (237-281)||(45042261-45042305)
chr1 (190-226)||(45740574-45740610)
chr1 (186-226)||(46947986-46948026)
chr1 (185-225)||(52669793-52669833)
[»] chr7 (21 HSPs)
chr7 (51-120)||(25887694-25887765)
chr7 (184-226)||(45607029-45607071)
chr7 (52-120)||(47193038-47193108)
chr7 (50-120)||(155869-155941)
chr7 (184-226)||(156005-156048)
chr7 (50-120)||(45607135-45607207)
chr7 (184-219)||(47192939-47192974)
chr7 (184-226)||(48866954-48866996)
chr7 (185-226)||(33223554-33223595)
chr7 (185-226)||(42663089-42663130)
chr7 (195-226)||(25887599-25887630)
chr7 (184-226)||(19426585-19426627)
chr7 (184-226)||(28596911-28596953)
chr7 (184-226)||(28824508-28824550)
chr7 (184-226)||(40842410-40842452)
chr7 (184-226)||(41966337-41966379)
chr7 (240-282)||(42640846-42640888)
chr7 (237-282)||(9055267-9055312)
chr7 (184-225)||(10591161-10591202)
chr7 (237-282)||(33212042-33212087)
chr7 (238-282)||(2756955-2756999)
[»] chr5 (22 HSPs)
chr5 (50-119)||(11767878-11767949)
chr5 (184-226)||(11768014-11768056)
chr5 (184-226)||(1774307-1774349)
chr5 (184-226)||(26660435-26660477)
chr5 (184-226)||(26932027-26932069)
chr5 (184-226)||(36713202-36713244)
chr5 (185-226)||(19127129-19127170)
chr5 (51-120)||(1774174-1774243)
chr5 (184-226)||(12661971-12662013)
chr5 (184-226)||(14323992-14324034)
chr5 (184-226)||(18449266-18449308)
chr5 (184-226)||(23991158-23991200)
chr5 (184-226)||(34381017-34381059)
chr5 (184-226)||(39595277-39595319)
chr5 (184-223)||(40223809-40223848)
chr5 (11-42)||(43265662-43265693)
chr5 (184-226)||(12718404-12718446)
chr5 (184-226)||(12779630-12779672)
chr5 (237-282)||(31708370-31708415)
chr5 (237-282)||(32873175-32873220)
chr5 (237-282)||(36416088-36416133)
chr5 (190-226)||(12910789-12910825)
[»] chr2 (15 HSPs)
chr2 (51-120)||(11229210-11229281)
chr2 (184-226)||(11229345-11229387)
chr2 (59-120)||(43725316-43725379)
chr2 (183-226)||(4738595-4738638)
chr2 (183-226)||(33296094-33296137)
chr2 (184-226)||(5455477-5455519)
chr2 (236-282)||(11980650-11980696)
chr2 (51-119)||(5455342-5455412)
chr2 (237-282)||(16754396-16754441)
chr2 (237-282)||(31635836-31635881)
chr2 (51-120)||(5067531-5067601)
chr2 (184-226)||(5067670-5067712)
chr2 (184-226)||(30856812-30856854)
chr2 (184-226)||(36435686-36435728)
chr2 (237-282)||(14797676-14797721)
[»] chr6 (8 HSPs)
chr6 (52-120)||(24752342-24752412)
chr6 (50-120)||(26378273-26378345)
chr6 (187-226)||(32457279-32457318)
chr6 (184-226)||(6435041-6435083)
chr6 (184-226)||(9954553-9954595)
chr6 (184-226)||(29383562-29383604)
chr6 (237-282)||(8778898-8778943)
chr6 (237-282)||(17835612-17835657)
[»] chr4 (25 HSPs)
chr4 (184-226)||(52392249-52392291)
chr4 (185-226)||(15596401-15596442)
chr4 (184-226)||(1031760-1031802)
chr4 (184-226)||(4896524-4896566)
chr4 (184-226)||(6953412-6953454)
chr4 (184-226)||(46566934-46566976)
chr4 (237-282)||(1562562-1562607)
chr4 (237-282)||(12241058-12241103)
chr4 (237-282)||(33820362-33820407)
chr4 (237-281)||(3968885-3968929)
chr4 (186-226)||(11064115-11064155)
chr4 (195-226)||(23347780-23347811)
chr4 (187-226)||(34116567-34116606)
chr4 (183-226)||(51389097-51389140)
chr4 (184-226)||(46794525-46794567)
chr4 (184-226)||(51039140-51039182)
chr4 (184-226)||(51717306-51717348)
chr4 (50-106)||(22257084-22257140)
chr4 (237-282)||(25523224-25523269)
chr4 (237-282)||(25725720-25725765)
chr4 (237-282)||(39881056-39881101)
chr4 (237-282)||(47998594-47998639)
chr4 (237-282)||(55595949-55595994)
chr4 (186-226)||(24772676-24772716)
chr4 (198-226)||(33986161-33986189)
[»] chr3 (29 HSPs)
chr3 (184-226)||(20380913-20380955)
chr3 (186-226)||(24537224-24537264)
chr3 (184-226)||(7294123-7294166)
chr3 (187-226)||(48945852-48945891)
chr3 (50-120)||(51672974-51673046)
chr3 (184-226)||(30796638-30796680)
chr3 (184-226)||(34733315-34733357)
chr3 (184-226)||(51464296-51464338)
chr3 (184-225)||(11173464-11173505)
chr3 (237-282)||(11335328-11335373)
chr3 (237-282)||(40159864-40159909)
chr3 (237-281)||(51032651-51032695)
chr3 (50-120)||(7293987-7294059)
chr3 (187-226)||(18169162-18169201)
chr3 (50-120)||(20380777-20380849)
chr3 (50-119)||(43169642-43169712)
chr3 (239-282)||(47988511-47988554)
chr3 (239-282)||(47997798-47997841)
chr3 (239-282)||(48007085-48007128)
chr3 (184-226)||(108436-108478)
chr3 (184-226)||(1901950-1901992)
chr3 (184-226)||(1911396-1911438)
chr3 (184-226)||(5398923-5398965)
chr3 (184-226)||(22813077-22813119)
chr3 (184-226)||(26279889-26279931)
chr3 (184-226)||(35272032-35272074)
chr3 (50-103)||(51464154-51464207)
chr3 (184-226)||(51672868-51672910)
chr3 (237-281)||(31017421-31017465)
[»] scaffold0508 (2 HSPs)
scaffold0508 (187-226)||(11563-11602)
scaffold0508 (50-120)||(11424-11496)
[»] scaffold0011 (1 HSPs)
scaffold0011 (184-226)||(219688-219730)
[»] scaffold0131 (1 HSPs)
scaffold0131 (187-226)||(15561-15600)
[»] scaffold0026 (1 HSPs)
scaffold0026 (184-226)||(113630-113672)
[»] scaffold0060 (1 HSPs)
scaffold0060 (51-106)||(6944-6999)
[»] scaffold0002 (1 HSPs)
scaffold0002 (186-226)||(6432-6472)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 24946182 - 24946113
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaacttttttctcacttttcattggtc 120  Q
    |||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24946182 agagcagtgatatttgaacaa-ccattttagacaacttttggtacaacttttttctcacttttcattggtc 24946113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11223883 - 11223925
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  11223883 aagttgtcaagaagttgtcacaaaatggatgtacaaatatcat 11223925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 22852863 - 22852905
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  22852863 aagttgtcaagaagttgtcacaaagtggttgtacaaatatcat 22852905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 27836227 - 27836185
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  27836227 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 27836185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 45101443 - 45101401
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  45101443 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 45101401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 9550478 - 9550433
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||    
T  9550478 gagaaatgatatttgtccaatcattttctaacaactttttgacaac 9550433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 30925542 - 30925613
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caac--ttttttctcacttttcattggt 119  Q
    |||||||| |||||||||||| |||||||| ||||||||||||| ||||  ||||||||| ||||||||||||    
T  30925542 agagtagtgatatttgaacaa-ccattttatacaacttttggtgacaacttttttttctctcttttcattggt 30925613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 7325895 - 7325826
Alignment:
Q  52 agtagtaatatttgaacaaaccattttagacaacttttggtgcaactt---ttttctcacttttcattggt 119  Q
    |||||| |||||||||||| |||||||||| |||||||||| ||| ||   ||||||||||||||||||||    
T  7325895 agtagtgatatttgaacaa-ccattttagataacttttggtacaaattattttttctcacttttcattggt 7325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 7559362 - 7559327
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaata 222  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7559362 ttgtcaagaagttgtcacaaagtggttgtacaaata 7559327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 7596918 - 7596957
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  7596918 ttgtcaagaagttgtcacaaagtgattgtacaaatatcat 7596957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 21273737 - 21273776
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  21273737 ttgtcaagaagttgtcacaaaatggttgtacaaatatcat 21273776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7279979 - 7280021
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || | ||||||||||||||||||||||||||||||    
T  7279979 aagttgttaaaatgttgtcacaaagtggatgtacaaatatcat 7280021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11223747 - 11223818
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaactt---ttttctcacttttcattggt 119  Q
    |||||||| |||||||||||| |  ||| |||||||||||||| ||||||   ||||||||||||||||||||    
T  11223747 agagtagtgatatttgaacaatct-tttgagacaacttttggtacaacttcttttttctcacttttcattggt 11223818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11879514 - 11879556
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| |||||||||||||||||| ||||| |||||||    
T  11879514 aagttgtcaaaaagttgtcacaaagtggacgtacatatatcat 11879556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11896930 - 11896972
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| |||||||||||||||||| ||||| |||||||    
T  11896930 aagttgtcaaaaagttgtcacaaagtggacgtacatatatcat 11896972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 32175001 - 32174959
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| || |||||||||||||||||||| ||||||||    
T  32175001 aagttgtcaaaaaattgtcacaaagtggatgtacgaatatcat 32174959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 40842061 - 40842019
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||    
T  40842061 aagttgtcaaaaagttatcacaaagtggttgtacaaatatcat 40842019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 31806299 - 31806344
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| ||||| |||||||||||    
T  31806299 gagaaatgatatttgtacaaccattttctaacaattttttgacaac 31806344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 39153753 - 39153708
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||    
T  39153753 gagaaatgatatttgtaccacaattttctaacaattttttgacaac 39153708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 40719714 - 40719669
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||| ||||||||||    
T  40719714 gagaaatgatatttgtacaaccattttctaacaaccttttgacaac 40719669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 9048387 - 9048343
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||    
T  9048387 gagaaatgatatttgtataaccattttctaacaactttttgacaa 9048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 22767132 - 22767176
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||||||| |||| ||||||  |||||||||||||||    
T  22767132 gagaaatgatatttgtacaaccattttctcacaactttttgacaa 22767176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 40604775 - 40604731
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||| ||| |||||||||||  |||||||||||||||    
T  40604775 gagaaatgatatctgtacaacaattttctgacaactttttgacaa 40604731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 43602497 - 43602449
Alignment:
Q  234 aacgagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    ||||||||||||||||||| |||| |||||   ||||||||||||||||    
T  43602497 aacgagaaatgatatttgtacaaccattttgctacaactttttgacaac 43602449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 45101579 - 45101509
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caactttttt--ctcacttttcattgg 118  Q
    |||||||| |||||||||||| |||||| | ||||||||||||| ||||||||||  ||| |||||||||||    
T  45101579 agagtagtgatatttgaacaa-ccatttcatacaacttttggtgacaacttttttttctctcttttcattgg 45101509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 30631733 - 30631805
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  30631733 agagtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 30631805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 35846209 - 35846279
Alignment:
Q  52 agtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  35846209 agtagtcatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 35846279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 31427981 - 31428023
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  31427981 aagttgtcaagaaattgtcacaaagtggttgtacaaatatcat 31428023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 50226903 - 50226945
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  50226903 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 50226945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 18541122 - 18541077
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  18541122 gagaaatgatatttgtacaaccattttctaacaactttttgacaac 18541077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 15182653 - 15182610
Alignment:
Q  238 agaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||    
T  15182653 agaaatgatatttgtacaactattttctaacaactttttgacaa 15182610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 30439423 - 30439362
Alignment:
Q  58 aatatttgaacaaaccattttagacaacttttggtg-caacttttttctcacttttcattggt 119  Q
    ||||||||||||| ||| || | ||||||||||||| ||||||||||||| ||||||||||||    
T  30439423 aatatttgaacaa-ccaattgatacaacttttggtgacaacttttttctctcttttcattggt 30439362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 49425784 - 49425743
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  49425784 aagttgtcaa-aagttgtcacaaagtggttgtacaaatatcat 49425743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 3606165 - 3606120
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  3606165 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 3606120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 27810318 - 27810273
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  27810318 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 27810273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 48872839 - 48872895
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caacttttttctc 106  Q
    |||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||    
T  48872839 agagtagtgatatttgaac-aaccatttcatacaacttttggtgacaacttttttctc 48872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 49453660 - 49453592
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaacttttttctcacttttcattggt 119  Q
    |||||||| |||||||||||| | |||| | ||||||||||   ||||||||||||| ||||||||||||    
T  49453660 agagtagtgatatttgaacaa-ctatttgatacaacttttgtgacaacttttttctctcttttcattggt 49453592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 50017494 - 50017449
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||    
T  50017494 gagaaatgatatttgtacaacaattttattacaactttttgacaac 50017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 50142006 - 50141961
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| ||||||  ||||||||||||||||    
T  50142006 gagaaatgatatttgttcaactattttctcacaactttttgacaac 50141961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 5309074 - 5309106
Alignment:
Q  194 gaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||| ||||||||||||||    
T  5309074 gaagttgtcacaaagtggttgtacaaatatcat 5309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 12708090 - 12708134
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||    
T  12708090 gagaaatgatatttgtagaaccattttctaacaactttttgacaa 12708134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 12713544 - 12713588
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||    
T  12713544 gagaaatgatatttgtagaaccattttctaacaactttttgacaa 12713588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 12717635 - 12717679
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||    
T  12717635 gagaaatgatatttgtagaaccattttctaacaactttttgacaa 12717679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 45042261 - 45042305
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||||||| |||| |||||| ||||| ||||||||||    
T  45042261 gagaaatgatatttgtacaactattttctaacaattttttgacaa 45042305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 45740574 - 45740610
Alignment:
Q  190 tcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  45740574 tcaaaaagttgtcacaaagtggttgtacaaatatcat 45740610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 46948026 - 46947986
Alignment:
Q  186 gttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| ||||||||| ||| ||||||||||||||||||    
T  46948026 gttgtcaaaaagttgtcataaaatggatgtacaaatatcat 46947986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 52669793 - 52669833
Alignment:
Q  185 agttgtcaagaagttgtcacaaagtggatgtacaaatatca 225  Q
    ||||||| ||||||||||||||| ||| |||||||||||||    
T  52669793 agttgtccagaagttgtcacaaaatggttgtacaaatatca 52669833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 25887765 - 25887694
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  25887765 gagtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 25887694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 45607071 - 45607029
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  45607071 aagttgtcaagaagttgtcacaaagtagatgtacaaatatcat 45607029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 47193108 - 47193038
Alignment:
Q  52 agtagtaatatttgaacaaaccattttagacaacttttggtgcaactt---ttttctcacttttcattggtc 120  Q
    |||||| |||||||||||| |||||||||| |||||||||| ||||||   |||||||||||||||||||||    
T  47193108 agtagtgatatttgaacaa-ccattttagataacttttggtacaacttcttttttctcacttttcattggtc 47193038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 155869 - 155941
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| ||||||||||||||||||| | |||   ||||||||| ||||||||||||||    
T  155869 agagtagtgatatttgaacaa-ccattttagacaacttttgatacaacttcttttttcttacttttcattggtc 155941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 156005 - 156048
Alignment:
Q  184 aagttgtc-aagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  156005 aagttgtctaagaagttgtcacaaagtggatgtacaaatatcat 156048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 45607207 - 45607135
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaactt---ttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| | |||||||| |||||||||| ||||||   |||||||||||||||||||||    
T  45607207 agagtagtgatatttgaacaa-ctattttagataacttttggtacaacttcttttttctcacttttcattggtc 45607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 47192974 - 47192939
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaa 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  47192974 aagttgtcaagaagttgtcacaaagtggatgtacaa 47192939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 48866954 - 48866996
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  48866954 aagttgtcaaaaagttgtcacaaagtggctgtacaaatatcat 48866996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 33223554 - 33223595
Alignment:
Q  185 agttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  33223554 agttgtcaagaagttgtcacaaaatggttgtacaaatatcat 33223595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 42663130 - 42663089
Alignment:
Q  185 agttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  42663130 agttgtcaaaaagttgtcacaaaatggatgtacaaatatcat 42663089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 25887630 - 25887599
Alignment:
Q  195 aagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||||||||||    
T  25887630 aagttgtcacaaagtggatgtacaaatatcat 25887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 19426627 - 19426585
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  19426627 aagttgtcaaaaagttgtcacaaaatggttgtacaaatatcat 19426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 28596953 - 28596911
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || ||||||||||||||||| ||||||||||||||    
T  28596953 aagttgtaaaaaagttgtcacaaagtggttgtacaaatatcat 28596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 28824550 - 28824508
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  28824550 aagttgtcaaaaagttgtcagaaagtggttgtacaaatatcat 28824508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 40842452 - 40842410
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| |  |||||||||||||||||||||||||||||    
T  40842452 aagttgtcaaaagattgtcacaaagtggatgtacaaatatcat 40842410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 41966379 - 41966337
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| || |||||||||||||| ||||||||||||||    
T  41966379 aagttgtcaaaaaattgtcacaaagtggttgtacaaatatcat 41966337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 42640846 - 42640888
Alignment:
Q  240 aaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    ||||||||||||| |||| |||||| |||||||||||||||||    
T  42640846 aaatgatatttgtacaactattttctaacaactttttgacaac 42640888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 9055267 - 9055312
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  9055267 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 9055312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 10591202 - 10591161
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatca 225  Q
    |||||||  ||||||||||||||||||| |||||||||||||    
T  10591202 aagttgtttagaagttgtcacaaagtggttgtacaaatatca 10591161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 33212042 - 33212087
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| ||||| |||||||||||    
T  33212042 gagaaatgatatttgtacaaccattttctaacaattttttgacaac 33212087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 2756999 - 2756955
Alignment:
Q  238 agaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    ||||||||||||||| |||| | |||| |||||||||||||||||    
T  2756999 agaaatgatatttgtacaaccaatttctaacaactttttgacaac 2756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11767878 - 11767949
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggt 119  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||   |||||||||||||||||||||||    
T  11767878 agagtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggt 11767949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11768014 - 11768056
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11768014 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 11768056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 1774307 - 1774349
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  1774307 aagttgtcaagaagttgtcacaaagtagatgtacaaatatcat 1774349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 26660435 - 26660477
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  26660435 aagttgtcaagaagttgtcacaaaatggatgtacaaatatcat 26660477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 26932027 - 26932069
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  26932027 aagttgtcaagaagttgtcacaaaatggatgtacaaatatcat 26932069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 36713202 - 36713244
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  36713202 aagttgtcaagaagttgtcacaaagtggttgtacaaatatcat 36713244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 19127170 - 19127129
Alignment:
Q  185 agttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  19127170 agttgtcaagaagttgtcacaaagtggttgtacaaatatcat 19127129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 1774174 - 1774243
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtgcaac-ttttttctcacttttcattggtc 120  Q
    ||||||| |||||||||||| | ||||||||||| ||||||| |||| |||||| ||||||||||||||||    
T  1774174 gagtagtgatatttgaacaa-ctattttagacaatttttggtacaactttttttttcacttttcattggtc 1774243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12661971 - 12662013
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  12661971 aagttgtcaaaaaattgtcacaaagtggatgtacaaatatcat 12662013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 14323992 - 14324034
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  14323992 aagttgtcaagaagttgtcacaaaatggatgtgcaaatatcat 14324034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 18449308 - 18449266
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  18449308 aagttgttaaaaagttgtcacaaagtggatgtacaaatatcat 18449266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 23991158 - 23991200
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  23991158 aagttgtcaggaagttgtcacaaagtggttgtacaaatatcat 23991200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 34381059 - 34381017
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  34381059 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 34381017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 39595319 - 39595277
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  39595319 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 39595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 40223809 - 40223848
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatat 223  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  40223809 aagttgtcaaaaagttgtcacaaagtggttgtacaaatat 40223848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 43265662 - 43265693
Alignment:
Q  11 cagagattgaagtttcacatgtaaaggaacaa 42  Q
    ||||||||||||||||||||||||||||||||    
T  43265662 cagagattgaagtttcacatgtaaaggaacaa 43265693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12718404 - 12718446
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  12718404 aagttgtcaaaaagttgtcacaaattggttgtacaaatatcat 12718446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12779630 - 12779672
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  12779630 aagttgtcaaaaagttgtcacaaattggttgtacaaatatcat 12779672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 31708370 - 31708415
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||    
T  31708370 gagaaatgatatttgtacaaccattttataacaactttttgacaac 31708415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 32873220 - 32873175
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  32873220 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 32873175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 36416133 - 36416088
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| ||||| |||||||||||    
T  36416133 gagaaatgatatttgtacaaccattttctaacaattttttgacaac 36416088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 12910825 - 12910789
Alignment:
Q  190 tcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  12910825 tcaaaaagttgtcacaaagtggttgtacaaatatcat 12910789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 11229210 - 11229281
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11229210 gagtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 11229281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11229345 - 11229387
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11229345 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 11229387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 43725379 - 43725316
Alignment:
Q  59 atatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  43725379 atatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 43725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 4738595 - 4738638
Alignment:
Q  183 gaagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  4738595 gaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 4738638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 33296094 - 33296137
Alignment:
Q  183 gaagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  33296094 gaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 33296137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 5455477 - 5455519
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  5455477 aagttgtcaaaaggttgtcacaaagtggatgtacaaatatcat 5455519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 11980650 - 11980696
Alignment:
Q  236 cgagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||    
T  11980650 cgagaaatgatatttgtacaaccattttctaacaactttttgacaac 11980696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 5455342 - 5455412
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggt 119  Q
    |||||||||||||||||| |||||||||| ||||||||||| | ||   |||||||||| ||||||||||||    
T  5455342 gagtagtaatatttgaac-aaccattttatacaacttttggggtaatttcttttttctctcttttcattggt 5455412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 16754396 - 16754441
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||    
T  16754396 gagaaatgatatttatacaacaattttctaacaactttttgacaac 16754441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 31635881 - 31635836
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  31635881 gagaaatgatatttgtacaaccattttctaacaactttttgacaac 31635836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 5067531 - 5067601
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    ||||||| |||||||||||| | ||||||||||||||||| | |||   ||||||||||||||||||||||||    
T  5067531 gagtagtgatatttgaacaatc-attttagacaacttttgat-caacttcttttttctcacttttcattggtc 5067601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 5067670 - 5067712
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||    
T  5067670 aagttatcaaaaagttgtcacaaagtagatgtacaaatatcat 5067712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 30856854 - 30856812
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  30856854 aagttgtctaaaagttgtcacaaagtggttgtacaaatatcat 30856812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 36435728 - 36435686
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || ||||||||||||||||| ||||||||||||||    
T  36435728 aagttgttaaaaagttgtcacaaagtggttgtacaaatatcat 36435686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 14797721 - 14797676
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  14797721 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 14797676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 24752412 - 24752342
Alignment:
Q  52 agtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  24752412 agtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttctcacttttcattggtc 24752342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 26378273 - 26378345
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| ||||||||||||||||||| | |||   ||||||||||| ||||||||||||    
T  26378273 agagtagtgatatttgaacaa-ccattttagacaacttttgatacaacttcttttttctcatttttcattggtc 26378345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 32457279 - 32457318
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  32457279 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 32457318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 6435083 - 6435041
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  6435083 aagttgtctaaaagttgtcacaaagtggttgtacaaatatcat 6435041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 9954595 - 9954553
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  9954595 aagttgtcaaaaagttgtcacaaattggttgtacaaatatcat 9954553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 29383604 - 29383562
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  29383604 aagttgtcaaaaagttgtcagaaagtggttgtacaaatatcat 29383562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 8778943 - 8778898
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||    
T  8778943 gagaaatgatatttgtacaaccattttttaacaactttttgacaac 8778898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 17835612 - 17835657
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| ||||  ||||| |||||||||||||||||    
T  17835612 gagaaatgatatttgtacaacccttttctaacaactttttgacaac 17835657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 52392249 - 52392291
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  52392249 aagttgtcaaaaagttgtcacaaagtggatgtacaaatatcat 52392291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 15596442 - 15596401
Alignment:
Q  185 agttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15596442 agttgtcaagaagttgtcacaaagtggttgtacaaatatcat 15596401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 1031802 - 1031760
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  1031802 aagttgtcaagaagttatcacaaagtggttgtacaaatatcat 1031760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 4896524 - 4896566
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  4896524 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 4896566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 6953412 - 6953454
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  6953412 aagttgttaaaaagttgtcacaaagtggatgtacaaatatcat 6953454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 46566976 - 46566934
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  46566976 aagttgtctaaaagttgtcacaaagtggatgtacaaatatcat 46566934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 1562607 - 1562562
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  1562607 gagaaatgatatttgtacaaccattttctaacaactttttgacaac 1562562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 12241058 - 12241103
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  12241058 gagaaatgatatttgtacaactattttctaacaactttttgacaac 12241103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 33820407 - 33820362
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  33820407 gagaaatgatatttgtacaactattttctaacaactttttgacaac 33820362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 3968885 - 3968929
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||    
T  3968885 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 3968929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 11064115 - 11064155
Alignment:
Q  186 gttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  11064115 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 11064155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 23347811 - 23347780
Alignment:
Q  195 aagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||||||||||    
T  23347811 aagttgtcacaaagtggatgtacaaatatcat 23347780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 34116567 - 34116606
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  34116567 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 34116606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 51389097 - 51389140
Alignment:
Q  183 gaagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||    
T  51389097 gaagttgtcaaaaagttgttacaaagtggttgtacaaatatcat 51389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 46794525 - 46794567
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  46794525 aagttgtcaaaaagttgtcagaaagtggttgtacaaatatcat 46794567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 51039140 - 51039182
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||| | ||||||||||||||    
T  51039140 aagttgtcaaaaagttgtcacaaagtagttgtacaaatatcat 51039182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 51717306 - 51717348
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||    
T  51717306 aagttatcaagaagttgtcacaaattggttgtacaaatatcat 51717348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 22257084 - 22257140
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caacttttttctc 106  Q
    |||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||    
T  22257084 agagtagtgatatttgaac-aaccatttcatacaacttttggtgacaacttttttctc 22257140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 25523269 - 25523224
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| ||||||  ||||||||||||||||    
T  25523269 gagaaatgatatttgtacaactattttctcacaactttttgacaac 25523224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 25725765 - 25725720
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  25725765 gagaaatgatatttgtacaaccactttctaacaactttttgacaac 25725720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 39881101 - 39881056
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||  |||||| |||||||||||||||||    
T  39881101 gagaaatgatatttgtacaatcattttctaacaactttttgacaac 39881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 47998594 - 47998639
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||    
T  47998594 gagaaatgatatttgtacaaccattttgtaacaactttttgacaac 47998639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 55595949 - 55595994
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||    
T  55595949 gagaaatgatatttgtacaaccaatttctaacaactttttgacaac 55595994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 24772716 - 24772676
Alignment:
Q  186 gttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| ||||||||| ||| ||||||||||||||||||    
T  24772716 gttgtcaaaaagttgtcataaaatggatgtacaaatatcat 24772676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 33986189 - 33986161
Alignment:
Q  198 ttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||||    
T  33986189 ttgtcacaaagtggatgtacaaatatcat 33986161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 20380913 - 20380955
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  20380913 aagttgtcaagaagttgtcacaaagtggttgtacaaatatcat 20380955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 24537264 - 24537224
Alignment:
Q  186 gttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  24537264 gttgtcaaaaagttgtcacaaagtggatgtacaaatatcat 24537224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7294123 - 7294166
Alignment:
Q  184 aagttgtc-aagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  7294123 aagttgtctaagaagttgtcacaaagtggatgtacaaatatcat 7294166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 48945891 - 48945852
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  48945891 ttgtcaagaagttgtcacaaagtggttgtacaaatatcat 48945852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 51673046 - 51672974
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||   ||||||| ||| ||||||||||||    
T  51673046 agagtagtgatatttgaacaa-ccattttagacaacttttggtacaacttcttttttttcagttttcattggtc 51672974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 30796638 - 30796680
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  30796638 aagttgtcaagaagttgtcacaaagtggttgtgcaaatatcat 30796680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 34733315 - 34733357
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  34733315 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 34733357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 51464296 - 51464338
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  51464296 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 51464338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 11173505 - 11173464
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatca 225  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  11173505 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatca 11173464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 11335373 - 11335328
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  11335373 gagaaatgatatttgtacaaccattttctaacaactttttgacaac 11335328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 40159909 - 40159864
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  40159909 gagaaatgatatttgtacaactattttctaacaactttttgacaac 40159864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 51032695 - 51032651
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||    
T  51032695 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 51032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 7293987 - 7294059
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||||| ||||||||||||||||||| | |||   ||||||||| | ||||||||||||    
T  7293987 agagtagtgatatttgaacaa-ccattttagacaacttttgatacaacttcttttttcttatttttcattggtc 7294059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 18169201 - 18169162
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  18169201 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 18169162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 20380777 - 20380849
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||| |||||||||| ||||||||||   |||   ||||||||||||||||||||||||    
T  20380777 agagtagtgatatttgaac-aaccattttaaacaacttttgtgacaacttcttttttctcacttttcattggtc 20380849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 43169642 - 43169712
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caactttttt-ctcacttttcattggt 119  Q
    |||||||| |||||||||||| |||||| | ||||||||||||| |||||||||| ||| ||||||||||||    
T  43169642 agagtagtgatatttgaacaa-ccatttcatacaacttttggtgacaactttttttctctcttttcattggt 43169712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 47988554 - 47988511
Alignment:
Q  239 gaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  47988554 gaaatgatatttgtacaactattttctaacaactttttgacaac 47988511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 47997841 - 47997798
Alignment:
Q  239 gaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  47997841 gaaatgatatttgtacaactattttctaacaactttttgacaac 47997798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 48007128 - 48007085
Alignment:
Q  239 gaaatgatatttgtccaacaattttcgaacaactttttgacaac 282  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  48007128 gaaatgatatttgtacaactattttctaacaactttttgacaac 48007085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 108478 - 108436
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| || |||||||||||||| ||||||||||||||    
T  108478 aagttgtcaaaaaattgtcacaaagtggttgtacaaatatcat 108436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 1901950 - 1901992
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  1901950 aagttgtctaaaagttgtcacaaagtggttgtacaaatatcat 1901992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 1911396 - 1911438
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  1911396 aagttgtctaaaagttgtcacaaagtggttgtacaaatatcat 1911438  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 5398965 - 5398923
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| || |||||||||||||| ||||||||||||||    
T  5398965 aagttgtcaaaaaattgtcacaaagtggttgtacaaatatcat 5398923  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 22813119 - 22813077
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  22813119 aagttgtcaaaaagttgtcagaaagtggttgtacaaatatcat 22813077  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 26279931 - 26279889
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  26279931 aagttgtcaaaaagttgtcagaaagtggttgtacaaatatcat 26279889  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 35272074 - 35272032
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| | ||||||||||||||| ||||||||||||||    
T  35272074 aagttgtcaaaaggttgtcacaaagtggttgtacaaatatcat 35272032  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 51464154 - 51464207
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtg-caactttttt 103  Q
    |||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||    
T  51464154 agagtagtgatatttgaacaa-ccattttatacaacttttggtgacaactttttt 51464207  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 51672910 - 51672868
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||    
T  51672910 aagttgtcaaaaagttatcacaaagtagatgtacaaatatcat 51672868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 31017465 - 31017421
Alignment:
Q  237 gagaaatgatatttgtccaacaattttcgaacaactttttgacaa 281  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||    
T  31017465 gagaaatgatatttgtacaatcattttctaacaactttttgacaa 31017421  T

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Target: scaffold0508 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 11563 - 11602
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  11563 ttgtcaagaagttgtcacaaagtagatgtacaaatatcat 11602  T

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Target: scaffold0508; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 11424 - 11496
Alignment:
Q  50 agagtagtaatatttgaacaaaccattttagacaacttttggtgcaa---cttttttctcacttttcattggtc 120  Q
    |||||||| |||||||||| ||| ||||||||||||||||| | |||    |||||||||||||||||||||||    
T  11424 agagtagtgatatttgaac-aactattttagacaacttttgatacaatttattttttctcacttttcattggtc 11496  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 219688 - 219730
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  219688 aagttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 219730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 15561 - 15600
Alignment:
Q  187 ttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  15561 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcat 15600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 113672 - 113630
Alignment:
Q  184 aagttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    ||||||| || ||||||||||||||||| ||||||||||||||    
T  113672 aagttgttaaaaagttgtcacaaagtggttgtacaaatatcat 113630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 6999 - 6944
Alignment:
Q  51 gagtagtaatatttgaacaaaccattttagacaacttttggtg-caacttttttctc 106  Q
    ||||||| |||||||||||| |||||||| ||||||||||| | |||||||||||||    
T  6999 gagtagtgatatttgaacaa-ccattttatacaacttttggcgacaacttttttctc 6944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 6472 - 6432
Alignment:
Q  186 gttgtcaagaagttgtcacaaagtggatgtacaaatatcat 226  Q
    |||||||| ||||||||| ||| ||||||||||||||||||    
T  6472 gttgtcaaaaagttgtcataaaatggatgtacaaatatcat 6432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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