View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_153 (Length: 258)

Name: NF0846_high_153
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_153
NF0846_high_153
[»] chr6 (16 HSPs)
chr6 (10-229)||(31596480-31596699)
chr6 (24-143)||(29389126-29389245)
chr6 (24-157)||(30525786-30525919)
chr6 (35-158)||(33240831-33240952)
chr6 (33-131)||(9929335-9929432)
chr6 (51-131)||(29263803-29263883)
chr6 (56-158)||(18075520-18075621)
chr6 (61-138)||(31257572-31257649)
chr6 (19-158)||(9540489-9540628)
chr6 (75-158)||(33450817-33450900)
chr6 (94-159)||(30522112-30522177)
chr6 (56-127)||(989531-989601)
chr6 (73-124)||(21871688-21871739)
chr6 (99-161)||(6355752-6355814)
chr6 (87-159)||(9330243-9330315)
chr6 (76-140)||(13214180-13214244)
[»] chr7 (11 HSPs)
chr7 (25-159)||(22713386-22713519)
chr7 (25-158)||(35424848-35424980)
chr7 (24-131)||(17115923-17116030)
chr7 (90-143)||(12426987-12427041)
chr7 (24-158)||(3255092-3255226)
chr7 (94-158)||(40256821-40256885)
chr7 (56-105)||(40172497-40172546)
chr7 (44-131)||(20953228-20953315)
chr7 (25-154)||(44453615-44453743)
chr7 (98-154)||(31459424-31459480)
chr7 (52-84)||(36415995-36416027)
[»] chr8 (9 HSPs)
chr8 (24-158)||(37507550-37507683)
chr8 (25-144)||(40899652-40899771)
chr8 (61-138)||(7632687-7632764)
chr8 (24-158)||(27157638-27157771)
chr8 (75-131)||(39555898-39555953)
chr8 (100-159)||(26462347-26462406)
chr8 (76-158)||(40506627-40506709)
chr8 (199-230)||(11475561-11475592)
chr8 (94-140)||(9045716-9045762)
[»] chr5 (12 HSPs)
chr5 (16-138)||(28503201-28503322)
chr5 (24-129)||(22017651-22017756)
chr5 (27-140)||(40491706-40491819)
chr5 (75-155)||(8217121-8217200)
chr5 (98-158)||(7765248-7765308)
chr5 (61-118)||(22023753-22023810)
chr5 (98-154)||(13271486-13271542)
chr5 (82-158)||(36183337-36183412)
chr5 (74-124)||(18401259-18401309)
chr5 (38-160)||(41149517-41149638)
chr5 (87-127)||(17223111-17223151)
chr5 (99-143)||(32177306-32177350)
[»] chr2 (9 HSPs)
chr2 (69-155)||(38308085-38308171)
chr2 (70-158)||(43050126-43050213)
chr2 (24-131)||(5867943-5868049)
chr2 (25-155)||(775008-775137)
chr2 (24-141)||(24510925-24511041)
chr2 (43-158)||(13019632-13019747)
chr2 (89-140)||(13378425-13378476)
chr2 (100-159)||(28816193-28816252)
chr2 (100-156)||(19572582-19572638)
[»] chr1 (13 HSPs)
chr1 (26-158)||(23404890-23405021)
chr1 (42-158)||(37865442-37865558)
chr1 (27-142)||(563821-563935)
chr1 (16-141)||(18638981-18639107)
chr1 (38-158)||(46939960-46940080)
chr1 (71-140)||(48400944-48401012)
chr1 (100-158)||(51474048-51474106)
chr1 (94-158)||(31578003-31578067)
chr1 (19-113)||(30527664-30527757)
chr1 (98-144)||(31767947-31767993)
chr1 (96-141)||(52225859-52225904)
chr1 (98-158)||(7439108-7439168)
chr1 (38-144)||(48779686-48779789)
[»] chr3 (10 HSPs)
chr3 (24-158)||(1750080-1750214)
chr3 (25-158)||(26665441-26665574)
chr3 (28-109)||(42110934-42111015)
chr3 (69-155)||(51715027-51715112)
chr3 (43-140)||(31219200-31219295)
chr3 (24-158)||(33513343-33513475)
chr3 (17-127)||(7925387-7925496)
chr3 (24-129)||(15462065-15462169)
chr3 (43-131)||(20704969-20705057)
chr3 (115-159)||(43726580-43726624)
[»] chr4 (6 HSPs)
chr4 (69-158)||(41945223-41945310)
chr4 (87-158)||(38303266-38303337)
chr4 (24-154)||(39791218-39791346)
chr4 (98-144)||(39927526-39927572)
chr4 (24-118)||(53689058-53689152)
chr4 (76-140)||(9603867-9603930)
[»] scaffold0071 (1 HSPs)
scaffold0071 (24-129)||(23-127)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 31596480 - 31596699
Alignment:
Q  10 ctttcctttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31596480 ctttcctttccattctatgagtttttcgcgcgtcctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt 31596579  T
Q  110 gaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaagttcagattttgatccctaccgccaataaattttacacacgagtaaatc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31596580 gaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaagttcagagtttgatccctaccgccaataaattctacacacgagtaaatc 31596679  T
Q  210 agcattttagtccttgaaat 229  Q
    ||||||||||||||||||||    
T  31596680 agcattttagtccttgaaat 31596699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 29389126 - 29389245
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||| || |||||||||||  |||| || |||  |||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||    
T  29389126 ctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttgaaacatttcggat 29389225  T
Q  124 tttaaaattcgaatagggcg 143  Q
    ||||||||  ||||||||||    
T  29389226 tttaaaatctgaatagggcg 29389245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 30525786 - 30525919
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||| |||||||| || ||| |||| ||||||  |||||||||||||| |  |||||| |||||||||||||||||||||||||| |||    
T  30525786 ctatgagtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttcggat 30525885  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcat 157  Q
    | || |||||||||| ||| | ||| ||||||||    
T  30525886 tctataattcgaatatggcacgcaaaaaactcat 30525919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 33240831 - 33240952
Alignment:
Q  35 tcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcg 134  Q
    |||| ||||||||||||||| |||| ||||||  |||| | ||||| |||| |||||| ||| |||||||  ||||||| ||||| ||||||| ||| ||    
T  33240831 tcgcacgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaaac--gttgaaatatttcggattttagaatccg 33240928  T
Q  135 aatagggcgcacaagaaactcata 158  Q
    |||||||||||| |||||||||||    
T  33240929 aatagggcgcacgagaaactcata 33240952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 9929432 - 9929335
Alignment:
Q  33 tttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat 131  Q
    |||| |||||||||| |||||  |||| ||||||| ||||| ||||||||||  |||||| ||||||||| |||||||||| |||||||||||||||||    
T  9929432 tttctcgcgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaa-cacgttgaaagatttcagattttaaaat 9929335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 29263803 - 29263883
Alignment:
Q  51 gtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat 131  Q
    ||||||||| |||||| |||||| ||||||||||||||||||  || ||||||||| |||||||||||  |||||||||||    
T  29263803 gtttagattatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaat 29263883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 18075520 - 18075621
Alignment:
Q  56 gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc 155  Q
    |||| |||||| ||||||  |||||||||| |||||| || ||||||  ||||| ||| ||||||||||||| |||| ||||||||||||  ||||||||    
T  18075520 gattatagaatctgaacgaaataaacaccccataaaaaccaccaaaag-acgttaaaatatttcagattttataatttgaatagggcgcatgagaaactc 18075618  T
Q  156 ata 158  Q
    |||    
T  18075619 ata 18075621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 31257649 - 31257572
Alignment:
Q  61 tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaata 138  Q
    |||||| ||||||| |||||||| | |||||| | |||||||| |||||||||||||| ||||| || ||||||||||    
T  31257649 tagaatctgaacggtataaacactctataaaaacatccaaaaatacgttgaaacattttagattctataattcgaata 31257572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 9540489 - 9540628
Alignment:
Q  19 ccattctat-gagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatt 117  Q
    ||||||||| |||||| | ||||  ||||| ||||||| ||| || |||||||| | ||||||||||| |||||||||| |||||| ||| | | | |||    
T  9540489 ccattctattgagtttcttgcgcttcctatgcagtttaaattataaaatttgaatgacataaacaccctataaaatccttcaaaaa-acggtaagatatt 9540587  T
Q  118 tcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||||||| |||  |||||||||||   |||||||||||    
T  9540588 tcagattttagaatctgaatagggcgcgtgagaaactcata 9540628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 33450900 - 33450817
Alignment:
Q  75 cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    ||||||||||   ||||| |||||||||||||||||||| |||||  |||||| ||| |||||||| ||| |||||| ||||||    
T  33450900 cataaacacctcctaaaagcctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcata 33450817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 30522112 - 30522177
Alignment:
Q  94 cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    |||||||||||||||  ||||||||| ||||||  ||| |||||||||| |||||||| |||||||    
T  30522112 cctccaaaaacacgtaaaaacatttcggattttggaatccgaatagggcacacaagaacctcataa 30522177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 989601 - 989531
Alignment:
Q  56 gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttta 127  Q
    |||| ||||||  |||| |||||||  ||| |||||||| |||||||||||||||||| |||||||||||||    
T  989601 gattttagaatccgaactgcataaaacccccataaaatc-tccaaaaacacgttgaaatatttcagatttta 989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 21871688 - 21871739
Alignment:
Q  73 ggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    |||||||||||||| ||||| |||||||||||||  ||||||||||| ||||    
T  21871688 ggcataaacacccagtaaaaacctccaaaaacactatgaaacatttcggatt 21871739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 6355752 - 6355814
Alignment:
Q  99 aaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaag 161  Q
    ||||| || |||||| |||| |||||||||||||| |||||| | ||| ||||||||||||||    
T  6355752 aaaaatacattgaaatattttagattttaaaattcaaataggacacacgagaaactcataaag 6355814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 9330243 - 9330315
Alignment:
Q  87 ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    |||||| ||| ||||||||| |||||| ||||| ||||| |  |||||||||| |||| | ||||||||||||    
T  9330243 ataaaaaccttcaaaaacacattgaaatatttcggatttcagcattcgaatagagcgcgcgagaaactcataa 9330315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 13214180 - 13214244
Alignment:
Q  76 ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    |||||||||| | | || |||| ||||||||||||||| ||||| |||||||||||  |||||||    
T  13214180 ataaacaccctaaataaacctctaaaaacacgttgaaatatttcggattttaaaatctgaatagg 13214244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 22713386 - 22713519
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||||||| || ||| | ||||| |||||||||| || |||  ||| |||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  22713386 tatgagtttctcacgcactctatatagtttagattataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagatt 22713485  T
Q  125 ttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    ||||||||| |||| ||||||| ||||||||||||    
T  22713486 ttaaaattcaaata-ggcgcacgagaaactcataa 22713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 35424848 - 35424980
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||| ||| ||| ||| |||||  ||||| |||| |||||| ||||||||||||||| |  |||||| |||||||||  | ||| ||| ||||||||||    
T  35424848 tatgaatttctcgtgcgtcctatgtagtttggattatagaatctgaacggcataaacatcgcataaaaacctccaaaat-atgttaaaatatttcagatt 35424946  T
Q  125 ttaaaattcgaatagggcgcacaagaaactcata 158  Q
    ||| ||||||| |||||||||| |||||||||||    
T  35424947 ttagaattcgattagggcgcacgagaaactcata 35424980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 17116030 - 17115923
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||| || ||||  ||||||  ||| ||||||| ||||| ||||||||||| |||||| | | |||||||||||||||| |||| ||||    
T  17116030 ctatgagtttctcgcacgtcctacgcagtttgtattatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagat 17115931  T
Q  124 tttaaaat 131  Q
    ||||||||    
T  17115930 tttaaaat 17115923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 12427041 - 12426987
Alignment:
Q  90 aaatcctccaaaaaca-cgttgaaacatttcagattttaaaattcgaatagggcg 143  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  12427041 aaatcctccaaaaacaacgttgaaacatttcagattttagaattcgaatagggcg 12426987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 3255092 - 3255226
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| ||| | || |||| |||||  |||| || |||  ||||||||||||||||| |||||| ||| |||||| |  |||||| |||| ||||    
T  3255092 ctatgagtttctcgtgtgctctatgcagttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatattgaaatattttagat 3255191  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| ||| ||||||| |||| | |||||||||||    
T  3255192 tttagaatccgaatagagcgcgcgagaaactcata 3255226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 40256885 - 40256821
Alignment:
Q  94 cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    ||||||||||||||||| || ||||||||||||||||| |||||| ||||| | | |||||||||    
T  40256885 cctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcata 40256821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 40172497 - 40172546
Alignment:
Q  56 gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaaca 105  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  40172497 gattatagaatttgaacaacataaacacccaataaaaacctccaaaaaca 40172546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 20953315 - 20953228
Alignment:
Q  44 ctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat 131  Q
    ||||||| || ||||| ||||||| ||||  |||||| | |  ||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  20953315 ctatacaattaagattatagaattcgaacaacataaatatcttataaaattctcaaaaaacatgttgaaacattttagattttaaaat 20953228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 44453743 - 44453615
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||||||| || ||||| ||||||||||   ||| ||||||  |||| | ||||| || | |||||| | |||||||||||||||||| |||||  |||    
T  44453743 tatgagtttctcacgcgctctatacagttcgcattttagaatccgaactgtataaagactccataaaa-cttccaaaaacacgttgaaatatttcgaatt 44453645  T
Q  125 ttaaaattcgaatagggcgcacaagaaact 154  Q
    ||| ||| |||||||| || || |||||||    
T  44453644 ttagaatccgaataggacgtacgagaaact 44453615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 31459480 - 31459424
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaact 154  Q
    |||||| ||||||||| ||||| |||||||||||| ||||||| | ||| |||||||    
T  31459480 caaaaatacgttgaaatatttcggattttaaaatttgaataggacacacgagaaact 31459424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 36415995 - 36416027
Alignment:
Q  52 tttagattgtagaatttgaacggcataaacacc 84  Q
    |||||||| ||||||||||||||||||||||||    
T  36415995 tttagattatagaatttgaacggcataaacacc 36416027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 37507683 - 37507550
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| ||| ||  ||||| || ||| | || |||||| |||||| |||||| |||| |||||| ||||||||| |||||||||||||||| |||    
T  37507683 ctatgagtttctcgtgcttcctatgcaatttggtttatagaatctgaacgacataaataccccataaaaacctccaaaa-cacgttgaaacatttcggat 37507585  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| |||||||||||||||| |||||||||||||    
T  37507584 tttagaattcgaatagggcgcgcaagaaactcata 37507550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 40899771 - 40899652
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||||||| ||||||| | || ||| || ||||| || |||| ||| ||||||||||||| |||||| ||| |||||||||||| ||| ||||||||||    
T  40899771 tatgagtttctcgcgcgtcttagacaattcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagatt 40899672  T
Q  125 ttaaaattcgaatagggcgc 144  Q
    |||||||  |||||||||||    
T  40899671 ttaaaatctgaatagggcgc 40899652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 7632764 - 7632687
Alignment:
Q  61 tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaata 138  Q
    |||||| |||||| ||||||||||| |||||| ||| |||||| ||||||||| |||||| ||||||||||| |||||    
T  7632764 tagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata 7632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 27157638 - 27157771
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||| ||||| ||| ||||||||| || ||  |||| ||||||  ||| |||||||| |||| |||||||| ||||||| |||||||||| | ||| |||    
T  27157638 ctatcagtttatcgtgcgccctatgcatttcggattatagaatccgaatggcataaataccccataaaatc-tccaaaaccacgttgaaataattcggat 27157736  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| ||| |||||||  ||||| |||||||||||    
T  27157737 tttagaatccgaatagcacgcacgagaaactcata 27157771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 39555953 - 39555898
Alignment:
Q  75 cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat 131  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||    
T  39555953 cataaacaccctataaaaatctc-aaaaacacgttgaaacatttcagattttaaaat 39555898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 26462406 - 26462347
Alignment:
Q  100 aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    |||||||||||||||||||||||||||| |||| ||||||| || || | ||||||||||    
T  26462406 aaaacacgttgaaacatttcagattttataatttgaataggacgtacgaaaaactcataa 26462347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 40506709 - 40506627
Alignment:
Q  76 ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||||| | |||||| ||||||||| |||||||||| ||||| ||||||| ||| | ||||||||  || |||||||||||    
T  40506709 ataaacactccataaaaacctccaaaatcacgttgaaatatttcggattttacaatccaaatagggcatacgagaaactcata 40506627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 11475592 - 11475561
Alignment:
Q  199 acgagtaaatcagcattttagtccttgaaatt 230  Q
    ||||||||||||||||||||||||||||||||    
T  11475592 acgagtaaatcagcattttagtccttgaaatt 11475561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 9045716 - 9045762
Alignment:
Q  94 cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    |||||||||||||||||||| |||||||||||| ||||  |||||||    
T  9045716 cctccaaaaacacgttgaaatatttcagatttttaaatctgaatagg 9045762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 28503201 - 28503322
Alignment:
Q  16 tttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaaca 115  Q
    ||||||| ||||||||||||| |||| ||||| |||||| |||| || |||| |||||||||||| || | |||||| ||||| |||| ||||||||| |    
T  28503201 tttccatcctatgagtttttcacgcgtcctatgcagtttggattataaaattcgaacggcataaatactccataaaaacctcc-aaaatacgttgaaata 28503299  T
Q  116 tttcagattttaaaattcgaata 138  Q
    |||||||||||| ||||||||||    
T  28503300 tttcagattttagaattcgaata 28503322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 22017756 - 22017651
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| | || || ||||| |||||  |||| ||||||  ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  22017756 ctatgagtttcttgcacgtcctatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaaacatttcagat 22017657  T
Q  124 tttaaa 129  Q
    ||||||    
T  22017656 tttaaa 22017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 40491819 - 40491706
Alignment:
Q  27 tgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttt 126  Q
    ||||||| ||||| |||||| | ||||| |||| |||||| | |||||||||||||||  |||||| |||||||||||||||||||||||||  ||||||    
T  40491819 tgagtttctcgcgtgccctacatagtttggattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattttggatttt 40491720  T
Q  127 aaaattcgaatagg 140  Q
    | ||| | ||||||    
T  40491719 agaatccaaatagg 40491706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 8217200 - 8217121
Alignment:
Q  75 cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc 155  Q
    ||||||||||| ||||||  ||| ||||||||||| ||||||||||||||||| |||| ||||||||||| | ||||||||    
T  8217200 cataaacaccccataaaaatctc-aaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactc 8217121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 7765248 - 7765308
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||||||||||||| ||||| |||||||||||| ||||| | ||||||| |||||||||    
T  7765248 caaaaacacgttgaaatatttcggattttaaaatttgaataagacgcacaaaaaactcata 7765308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 22023753 - 22023810
Alignment:
Q  61 tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacattt 118  Q
    |||||||  |||||||||||||||| ||||||  ||||||||||| ||||||||||||    
T  22023753 tagaattccaacggcataaacaccctataaaaagctccaaaaacatgttgaaacattt 22023810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 13271486 - 13271542
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaact 154  Q
    |||||||||||||||| ||||||||||||| ||||| |||||| ||| | |||||||    
T  13271486 caaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaact 13271542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 36183412 - 36183337
Alignment:
Q  82 acccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| |||||| |||||||||  | ||||||||||||| ||||||| ||| |||||| ||||||| |||||||||||    
T  36183412 accccataaaaacctccaaaat-atgttgaaacatttcggattttagaatccgaatatggcgcacgagaaactcata 36183337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 18401309 - 18401259
Alignment:
Q  74 gcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    |||||||||||  ||| |  |||||||||||||||||||||||||||||||    
T  18401309 gcataaacacctcatacagacctccaaaaacacgttgaaacatttcagatt 18401259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 41149638 - 41149517
Alignment:
Q  38 cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat 137  Q
    |||||||||| || ||  |||| |||||||||||| ||||||| | || |||||| | | |||||||||| ||||| || |  ||||||| ||||| |||    
T  41149638 cgcgccctatgcaattcggattttagaatttgaaccgcataaaaatcccataaaa-ctttcaaaaacacgatgaaatatgttggattttagaattcaaat 41149540  T
Q  138 agggcgcacaagaaactcataaa 160  Q
    ||||| ||| |||| ||||||||    
T  41149539 agggcacacgagaagctcataaa 41149517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 17223151 - 17223111
Alignment:
Q  87 ataaaatcctccaaaaacacgttgaaacatttcagatttta 127  Q
    |||||| ||| |||||||||||||||| |||||||||||||    
T  17223151 ataaaaacctgcaaaaacacgttgaaatatttcagatttta 17223111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 32177306 - 32177350
Alignment:
Q  99 aaaaacacgttgaaacatttcagattttaaaattcgaatagggcg 143  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||    
T  32177306 aaaaatacgttaaaacatttcagattttagaatacgaatagggcg 32177350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 38308085 - 38308171
Alignment:
Q  69 gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc 155  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||    
T  38308085 gaacggcataaacaccctataaaaactttcaaaaacacgttgaaacatttcagattttaaaactagaatagggcgcgcaagacactc 38308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 43050213 - 43050126
Alignment:
Q  70 aacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| |||||| ||||  ||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  43050213 aacgacataaataccctgtaaaaacctccaaaa-cacgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcata 43050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5868049 - 5867943
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacaccca-ataaaatcctccaaaaacacgttgaaacatttcaga 122  Q
    |||||||||| || ||||||||||||| ||   ||| ||||||  |||| ||||||| ||||| |||||||| |||||||||||||||||| ||||||||    
T  5868049 ctatgagtttctcacgcgccctatacaattcgaattttagaatccgaactgcataaa-acccacataaaatc-tccaaaaacacgttgaaatatttcaga 5867952  T
Q  123 ttttaaaat 131  Q
    |||||||||    
T  5867951 ttttaaaat 5867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 775137 - 775008
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||||||| || |||| |||||| |||||||||| ||||||  ||| || ||||| |||| |||||| ||||||||| |  ||||||||||||  || |    
T  775137 tatgagtttctcacgcgtcctataaagtttagattatagaatccgaatggaataaataccccataaaaacctccaaaa-cgtgttgaaacattttggaat 775039  T
Q  125 ttaaaattcgaatagggcgcacaagaaactc 155  Q
    |||||||  |||||| |||||| ||||||||    
T  775038 ttaaaatatgaatagagcgcacgagaaactc 775008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 24511041 - 24510925
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||| ||| |||||  |||||| |||||   ||| |||||||  ||||||||||||| || |||||| |||||||||  ||||| ||| |||||||||    
T  24511041 ctatgaatttctcgcgttccctatgcagttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaaat-acgtttaaatatttcagat 24510943  T
Q  124 tttaaaattcgaataggg 141  Q
    |||||||| |||||||||    
T  24510942 tttaaaatccgaataggg 24510925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 13019632 - 13019747
Alignment:
Q  43 cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggc 142  Q
    ||||| |||||| |||| ||||||  ||||||||||||||| | ||||||  || ||||| ||| ||||||| ||||||||||| |||| |||| ||| |    
T  13019632 cctatgcagtttggattatagaatccgaacggcataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattttcaaatccgaaaaggac 13019731  T
Q  143 gcacaagaaactcata 158  Q
     | | |||||||||||    
T  13019732 acgcgagaaactcata 13019747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 13378425 - 13378476
Alignment:
Q  89 aaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    |||| ||||||||||||| |||||| ||||||||||||| ||| ||||||||    
T  13378425 aaaaacctccaaaaacacattgaaatatttcagattttataatccgaatagg 13378476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 28816193 - 28816252
Alignment:
Q  100 aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    |||||||||||||| |||| | |||||| |||| ||||||||||||| ||||||| ||||    
T  28816193 aaaacacgttgaaatatttaaaattttataatttgaatagggcgcacgagaaacttataa 28816252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 19572638 - 19572582
Alignment:
Q  100 aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactca 156  Q
    |||||||||| ||||||||||||||||||||| | |||| ||| | | |||||||||    
T  19572638 aaaacacgttaaaacatttcagattttaaaatccaaatatggcacgccagaaactca 19572582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 23405021 - 23404890
Alignment:
Q  26 atgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattt 125  Q
    ||||||||||||||||||||||| | ||  || | |||||||  ||||||||||| |||| ||||| || |||||||||| |||||||| |||| |||||    
T  23405021 atgagtttttcgcgcgccctatatatttcggaatatagaattcaaacggcataaaaaccccataaa-tcttccaaaaacatgttgaaacgtttcggattt 23404923  T
Q  126 taaaattcgaatagggcgcacaagaaactcata 158  Q
    ||||||||||||| | ||  | |||||||||||    
T  23404922 taaaattcgaatatgacgtgcgagaaactcata 23404890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 37865442 - 37865558
Alignment:
Q  42 ccctatacagtttagattgtagaatttgaacggcataaacaccca-ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    |||||| |||||  |||| |||||| |||||| |||||||||||  |||||| |||||||||||||| ||| |||||||| |||||||||| ||||||||    
T  37865442 ccctatgcagttcggattatagaatctgaacgacataaacacccccataaaa-cctccaaaaacacgctgagacatttcaaattttaaaatccgaatagg 37865540  T
Q  141 gcgcacaagaaactcata 158  Q
    || ||  |||||||||||    
T  37865541 gcacatgagaaactcata 37865558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 563935 - 563821
Alignment:
Q  27 tgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttt 126  Q
    ||||||| ||||||| |||||||||||   ||| |||||||| || | ||||||||||| |||||||||| |||||||||||| | | |||||| |||||    
T  563935 tgagtttctcgcgcgacctatacagttcgaattatagaatttaaatgacataaacaccctataaaatcct-caaaaacacgttaacatatttcaaatttt 563837  T
Q  127 aaaattcgaatagggc 142  Q
    | ||||||| ||||||    
T  563836 agaattcgactagggc 563821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 18638981 - 18639107
Alignment:
Q  16 tttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaat-aaaatcctccaaaaacacgttgaaac 114  Q
    |||||||||||||||||| ||| || |||||| ||||| ||||| || |||||||||||||||| ||||| || ||||||  | ||||| |  ||||||     
T  18638981 tttccattctatgagtttctcgtgcaccctatgcagttcagattataaaatttgaacggcataagcaccccataaaaatctacaaaaaatatattgaaat 18639080  T
Q  115 atttcagattttaaaattcgaataggg 141  Q
    |||||  |||||||||| |||||||||    
T  18639081 atttcgaattttaaaatccgaataggg 18639107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 46940080 - 46939960
Alignment:
Q  38 cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat 137  Q
    ||||||||||||||||  |||| ||||||  ||||  ||||||||  | |||||  ||| ||||||||  |||||||||||||||||||| |||||||||    
T  46940080 cgcgccctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaaacatattgaaacatttcagattttagaattcgaat 46939981  T
Q  138 agggcgcacaagaaactcata 158  Q
    |||   ||||||||| |||||    
T  46939980 aggatccacaagaaattcata 46939960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 48401012 - 48400944
Alignment:
Q  71 acggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    ||||||||||||||| |||||| ||||| |||||||||| ||||||||| ||||||| ||| ||||||||    
T  48401012 acggcataaacaccctataaaaacctcc-aaaacacgttaaaacatttcggattttagaatccgaatagg 48400944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 51474048 - 51474106
Alignment:
Q  100 aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| ||||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  51474048 aaaagacgttaaaacatttcagattttataatttgaatacggcgcacgagaaactcata 51474106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 31578003 - 31578067
Alignment:
Q  94 cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||||||||||||||||| ||||| ||||||| ||| | |||||||||| | |||| ||||||    
T  31578003 cctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcata 31578067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 30527664 - 30527757
Alignment:
Q  19 ccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaa 113  Q
    |||| ||||| |||| || |||| ||||| ||| || |||| ||||||  |||||||||||| | || |||||| ||||||||||||||||||||    
T  30527664 ccatcctatgtgtttctcacgcgtcctatgcagattggattttagaatccgaacggcataaaaaacccataaaa-cctccaaaaacacgttgaaa 30527757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 31767947 - 31767993
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgc 144  Q
    |||||||||||||||| ||||| ||||||||||| | ||||||||||    
T  31767947 caaaaacacgttgaaatatttcggattttaaaatccaaatagggcgc 31767993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 52225859 - 52225904
Alignment:
Q  96 tccaaaaacacgttgaaacatttcagattttaaaattcgaataggg 141  Q
    |||||||||| ||||||| |||||  ||||||||||||||||||||    
T  52225859 tccaaaaacatgttgaaatatttcgaattttaaaattcgaataggg 52225904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 7439108 - 7439168
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||||||||||||| |||| |||||||| |||| ||||||| ||| | |||| ||||||    
T  7439108 caaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcata 7439168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 48779789 - 48779686
Alignment:
Q  38 cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat 137  Q
    |||||||||| || ||| |||| ||||||| |||||| ||||| |||   | ||| ||| |||||||| ||||||| |||||  |||||| ||| |||||    
T  48779789 cgcgccctatgcaattttgattatagaattcgaacggaataaaaacc---tcaaaaccttcaaaaacatgttgaaatatttcgaattttagaatccgaat 48779693  T
Q  138 agggcgc 144  Q
    |||||||    
T  48779692 agggcgc 48779686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 1750214 - 1750080
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    ||||||||||  ||| ||| |||||| |||| |||| ||||||  |||||  |||||||||| ||| || ||||| ||| ||||||||||||||| ||||    
T  1750214 ctatgagtttcccgcacgctctatactgtttggattatagaatccgaacgaaataaacaccctatacaaacctcctaaatcacgttgaaacattttagat 1750115  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| ||| | |||||| ||||| |||||||||||    
T  1750114 tttagaatccaaataggacgcacgagaaactcata 1750080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 26665441 - 26665574
Alignment:
Q  25 tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt 124  Q
    ||||||||| ||||||||||||| ||||||  ||| ||||||  |||||||||||||| || ||||||   ||  |||||| ||||||| ||||| ||||    
T  26665441 tatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaacaacccataaaaatttcggaaaacatgttgaaatatttcggatt 26665540  T
Q  125 ttaaaattcgaatagggcgcacaagaaactcata 158  Q
    ||||||| | |||||| ||| | |||||||||||    
T  26665541 ttaaaatccaaataggacgcgcgagaaactcata 26665574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 42110934 - 42111015
Alignment:
Q  28 gagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt 109  Q
    |||||| ||||||||||||| ||| || |||| ||||||| ||||| ||||||||||| |||||| ||||||||||||||||    
T  42110934 gagtttctcgcgcgccctatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaaaacacgtt 42111015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 51715112 - 51715027
Alignment:
Q  69 gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc 155  Q
    |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| ||| ||||| |||||| | ||||||||    
T  51715112 gaacagcataaacaccccataaaaacctccaaaa-cacgttaaaacatttcagattttagaatccgaatcgggcgcgcgagaaactc 51715027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 31219295 - 31219200
Alignment:
Q  43 cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    ||||| ||||| ||||| ||||||  ||||||||||||| ||| |||||| ||||||||| || | |||||||||||||||||||||||| |||||||    
T  31219295 cctatgcagttcagattatagaatccgaacggcataaactccccataaaa-cctccaaaa-catgctgaaacatttcagattttaaaatttgaatagg 31219200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 33513343 - 33513475
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    ||||||| || || |||||||||||||||| | ||| || |||  ||||  | |||| ||||| ||||| ||||| |||||||||||||| ||||  |||    
T  33513343 ctatgaggttctcacgcgccctatacagttcaaattttaaaatccgaactacgtaaaaaccca-taaaa-cctccgaaaacacgttgaaatatttaggat 33513440  T
Q  124 tttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||| ||| ||||||||| ||||||||||||||||    
T  33513441 tttagaatccgaatagggtgcacaagaaactcata 33513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 7925496 - 7925387
Alignment:
Q  17 ttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacat 116  Q
    |||||| |||| ||||| ||||||||||||| | |||  || | ||||||| ||| || |||||||||| |||||| |||  ||||| ||||||||| ||    
T  7925496 ttccatcctataagtttctcgcgcgccctatgcggttcggaatatagaattcgaatggtataaacaccctataaaa-ccttaaaaaatacgttgaaatat 7925398  T
Q  117 ttcagatttta 127  Q
    |||||||||||    
T  7925397 ttcagatttta 7925387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 15462169 - 15462065
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||||| || ||| |||||   ||| ||||||   |||||||||||||||| |||||| |||| |||| |||||| ||| |||||||||    
T  15462169 ctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaa-cacgtttaaatatttcagat 15462071  T
Q  124 tttaaa 129  Q
    ||||||    
T  15462070 tttaaa 15462065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 20705057 - 20704969
Alignment:
Q  43 cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat 131  Q
    ||||| ||||||||||| ||||||   ||||| || |||| |  |||||| |||||||||| | ||| |||||||||| ||||||||||    
T  20705057 cctatgcagtttagattatagaatccaaacggtatcaacatctcataaaaacctccaaaaatatgttaaaacatttcaaattttaaaat 20704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 43726624 - 43726580
Alignment:
Q  115 atttcagattttaaaattcgaatagggcgcacaagaaactcataa 159  Q
    ||||| ||||||||||||| |||||||||| | ||||||||||||    
T  43726624 atttctgattttaaaattctaatagggcgcgcgagaaactcataa 43726580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 41945223 - 41945310
Alignment:
Q  69 gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    ||||| |||||||||||| ||||| ||| ||||| || ||| ||||||||||||||||| ||||| |||||||||| ||||||| |||||    
T  41945223 gaacgacataaacaccca-taaaaaccttcaaaa-catgttaaaacatttcagattttagaattcaaatagggcgcgcaagaaagtcata 41945310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 38303337 - 38303266
Alignment:
Q  87 ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata 158  Q
    |||||| ||||||||||| | ||||||||||||||||||||| || ||||||| | || | |||||||||||    
T  38303337 ataaaaacctccaaaaacgcattgaaacatttcagattttaagatccgaatagagtgcgcgagaaactcata 38303266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 39791346 - 39791218
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||| |||| ||| | ||| | ||| ||||||  ||||||||||||||||| ||||||  || ||||| |||||||||| ||||| |||    
T  39791346 ctatgagtttctcgc-cgccatatcctgttaatattatagaatccgaacggcataaacaccccataaaaatcttcaaaa-cacgttgaaatatttcggat 39791249  T
Q  124 tttaaaattcgaatagggcgcacaagaaact 154  Q
    |||| ||||| |||||| ||||  |||||||    
T  39791248 tttagaattcaaataggacgcatgagaaact 39791218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 39927526 - 39927572
Alignment:
Q  98 caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgc 144  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  39927526 caaaaacacgttgaaacatttcggattttaaaatccgagtagggcgc 39927572  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 53689152 - 53689058
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacattt 118  Q
    |||||||||||||  | ||| |||| | ||| |||| |||||| |||||| ||||||||||| ||||||   | |||||| ||||||||||||||    
T  53689152 ctatgagtttttcctgtgccttatataatttggattatagaatctgaacgacataaacaccccataaaaaatttcaaaaatacgttgaaacattt 53689058  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 9603867 - 9603930
Alignment:
Q  76 ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 140  Q
    ||||| |||| |||||| |||||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  9603867 ataaaaaccccataaaa-cctccaaaaatacgttaaaatatttcagattttagaatttgaatagg 9603930  T

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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 23 - 127
Alignment:
Q  24 ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat 123  Q
    |||||||||| |||||| || ||| |||||   ||| ||||||   |||||||||||||||| |||||| |||| |||| |||||| ||| |||||||||    
T  23 ctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaa-cacgtttaaatatttcagat 121  T
Q  124 tttaaa 129  Q
    ||||||    
T  122 tttaaa 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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