View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_164 (Length: 252)
Name: NF0846_high_164
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_164 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 3384792 - 3384587
Alignment:
| Q |
32 |
ttggttaccatttttcatatttgagtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataat |
131 |
Q |
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| T |
3384792 |
ttggttaccatttttcatatttgagtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataat |
3384693 |
T |
|
| Q |
132 |
tccttctttcaatttgttgtttgagtccaatttagatggattagatagattctagatgattttccatggagtaagtttttgtttccaactgagatctgat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3384692 |
tccttctttcaatttgttgtttgagtccaatttagatggattagatagattctagatgattttccatggagtaagtttttgtttccaactgagatctgat |
3384593 |
T |
|
| Q |
232 |
tggcat |
237 |
Q |
| |
|
|||||| |
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| T |
3384592 |
tggcat |
3384587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 5155573 - 5155406
Alignment:
| Q |
47 |
catatttgagtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattccttctttcaattt |
146 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5155573 |
catatttgagtttaatgttccaactctgagtctgctttctcttaattagttaatttccttgttcctcatataaaaacctaataattccttctttcaattt |
5155474 |
T |
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| Q |
147 |
gttgtttgagtccaatttagatggattagatagattctagatgattttccatggagtaagtttttgtttccaact |
221 |
Q |
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| T |
5155473 |
gttgtttgactccaatttagatagat----tggcttcta---gattttccatggagtaggtttttgtttccaact |
5155406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 8530677 - 8530842
Alignment:
| Q |
49 |
tatttgagtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattccttctttcaatttgt |
148 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||| ||| |
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| T |
8530677 |
tatttgagtttaatgttgcaactctgagtctactttctcttaattagttaattaccttgttcctcatataaaaacctaataattcattctttaaatatgt |
8530776 |
T |
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| Q |
149 |
tgtttgagtccaatttagatggattagatagattctagatgattttccatggagtaagtttttgtttccaact |
221 |
Q |
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|||||||||||||||||||||||| | | ||||| |||||||||||||||| |||||||||||||||| |
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| T |
8530777 |
tgtttgagtccaatttagatggat----tggcttcta---gattttccatggagtaggtttttgtttccaact |
8530842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 26794950 - 26794791
Alignment:
| Q |
56 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtttg |
154 |
Q |
| |
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||||||||||||| |||||||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||||| ||||||||||| |
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| T |
26794950 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtttg |
26794851 |
T |
|
| Q |
155 |
agtccaatttagatggattagatagattctagatgattttccatggagtaagttttt-gtttccaac |
220 |
Q |
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|||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
26794850 |
agtccaatttagatggat----tagcttcta---gattttccatggagtaagtttttggtttccaac |
26794791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 40721924 - 40721804
Alignment:
| Q |
56 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtttg |
154 |
Q |
| |
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||||||||||||| |||||||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||| | ||||||||||| |
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| T |
40721924 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttgagtttgttgtttg |
40721825 |
T |
|
| Q |
155 |
agtccaatttagatggattag |
175 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40721824 |
agtccaatttagatggattag |
40721804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 27222916 - 27222996
Alignment:
| Q |
56 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt |
136 |
Q |
| |
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||||||||||||| | |||||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| |
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| T |
27222916 |
gtttaatgttgcatcactgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttcctt |
27222996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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