View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_169 (Length: 251)
Name: NF0846_high_169
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_169 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 246
Target Start/End: Original strand, 34524691 - 34524907
Alignment:
| Q |
30 |
gtaatatcatgtcttcaccacgtttatatgaacaaaaatataaccaagtgaagatttttctgtgggtattgcaacagnnnnnnncgcaatgcctcttttt |
129 |
Q |
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| T |
34524691 |
gtaatatcatgtcttcaccacgtttatatgaacaaaaatataaccaagtgaatatttttctgttggtattgcaacagaaaaaaacgcaatgcctcttttt |
34524790 |
T |
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| Q |
130 |
acatgcatcgtcaaagttatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatctattcagttattctaagaagtcaaaaatttgat |
229 |
Q |
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| T |
34524791 |
acatgcatcatcaaagttatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatctattcagttattctaagaagtcaaaaatttgat |
34524890 |
T |
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| Q |
230 |
gaaaagtgcttttaaag |
246 |
Q |
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| T |
34524891 |
gaaaagtgcttttaaag |
34524907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 34525303 - 34525400
Alignment:
| Q |
116 |
caatgcctctttttacatgcatcgtcaaagttatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatctattcagttattctaagaa |
215 |
Q |
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| T |
34525303 |
caatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgc--gtctatctattctactattctaagaa |
34525400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 27615990 - 27616074
Alignment:
| Q |
114 |
cgcaatgcctctttttacatgcatcgtcaaagttatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatcta |
198 |
Q |
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| T |
27615990 |
cgcaatgcctctttttacaagcatcgtcacaactatctaaagatataattaataaagcagtttctcgcatatgtatgcctgtcta |
27616074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 27632008 - 27632060
Alignment:
| Q |
147 |
tatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatctattc |
201 |
Q |
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| T |
27632008 |
tatctgaagatataattaataaagcagttcctcgcaaatgc--gcctatctattc |
27632060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 34516042 - 34516094
Alignment:
| Q |
147 |
tatctgaagatataattaataacgcagttcctcgcaaatgcatgcctatctattc |
201 |
Q |
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| T |
34516042 |
tatctgaagatataattaataaagcagttcctcgcaaatgc--gcctatctattc |
34516094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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