View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_17 (Length: 596)

Name: NF0846_high_17
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_17
NF0846_high_17
[»] chr3 (4 HSPs)
chr3 (4-583)||(46239941-46240520)
chr3 (143-582)||(23541336-23541775)
chr3 (142-420)||(30038134-30038412)
chr3 (241-426)||(34584674-34584859)
[»] chr7 (3 HSPs)
chr7 (112-582)||(3437067-3437537)
chr7 (239-405)||(14798952-14799118)
chr7 (239-405)||(15245944-15246110)
[»] chr5 (1 HSPs)
chr5 (142-426)||(29878125-29878409)
[»] chr8 (1 HSPs)
chr8 (142-426)||(3921199-3921483)
[»] chr4 (3 HSPs)
chr4 (142-318)||(6869027-6869201)
chr4 (142-426)||(4497222-4497506)
chr4 (251-429)||(11318291-11318469)
[»] scaffold0300 (1 HSPs)
scaffold0300 (142-426)||(18005-18289)
[»] chr6 (1 HSPs)
chr6 (142-426)||(24676042-24676326)
[»] scaffold0140 (1 HSPs)
scaffold0140 (263-363)||(40053-40153)
[»] chr1 (2 HSPs)
chr1 (142-245)||(36915336-36915439)
chr1 (241-426)||(30964560-30964745)
[»] scaffold0121 (1 HSPs)
scaffold0121 (251-429)||(43429-43607)
[»] chr2 (1 HSPs)
chr2 (251-429)||(18131561-18131739)


Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 4 - 583
Target Start/End: Complemental strand, 46240520 - 46239941
Alignment:
Q  4 gcagaacctgtgctcaacagtctcaaacatctcttcaaacacactcattagtccctgaaatattcaacaacaataatgttacaatattaatctatgatct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46240520 gcagaacctgtgctcaacagtctcaaacatctcttcaaacacactcattagtccctgaaatattcaacaccaataatgttacaatattaatctatgatct 46240421  T
Q  104 atatattaattaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagca 203  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240420 atatattaattaaatacatgaaatagactgacaacatttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagca 46240321  T
Q  204 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240320 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 46240221  T
Q  304 tagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaag 403  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46240220 cagttgacccccatactttgtctttagatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaag 46240121  T
Q  404 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatc 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  46240120 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatc 46240021  T
Q  504 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacct 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46240020 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacct 46239941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 143 - 582
Target Start/End: Complemental strand, 23541775 - 23541336
Alignment:
Q  143 accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt 242  Q
    |||||||| |||||||||||||| ||||||||  ||||  | |||||||||||||  |  | |||||||||||| ||||||||| |||| ||||  ||||    
T  23541775 accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt 23541676  T
Q  243 caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc 342  Q
    | || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| |||||    
T  23541675 ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc 23541576  T
Q  343 aaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggc 442  Q
     ||||||| |||||| ||||| |||||  | || ||||| || |||||||||||||||||||| ||||| |||||||||||||| | |  |||   |||     
T  23541575 taccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggt 23541476  T
Q  443 ctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaa 542  Q
    ||||| ||| | ||  ||||  | ||||||| |  ||| ||||||||||| |||||||| ||||  ||||| |  ||||| | |||||||||||| ||||    
T  23541475 ctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaa 23541376  T
Q  543 caattttctgagctatctgttttgctttccacgccctacc 582  Q
    ||||  ||||||| ||||||||||| ||||| ||||||||    
T  23541375 caatactctgagcaatctgttttgccttccaagccctacc 23541336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 142 - 420
Target Start/End: Original strand, 30038134 - 30038412
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| |||||||| | ||||||| |||||  || || |||||||||||    
T  30038134 taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt 30038233  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||||||||| ||  |||| || |  || |||||||    
T  30038234 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgacccccgtatcttgttttcaagtggcagccat 30038333  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacct 420  Q
    | || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||||| ||||||||    
T  30038334 ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaacct 30038412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 426
Target Start/End: Complemental strand, 34584859 - 34584674
Alignment:
Q  241 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 340  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  34584859 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 34584760  T
Q  341 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  34584759 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 34584674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 112 - 582
Target Start/End: Original strand, 3437067 - 3437537
Alignment:
Q  112 attaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg 211  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437067 attaaatacatgaaatagactgacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg 3437166  T
Q  212 aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3437167 aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgac 3437266  T
Q  312 ccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaaga 411  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3437267 caccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaaga 3437366  T
Q  412 tccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatc 511  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437367 tccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatc 3437466  T
Q  512 attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437467 attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 3437537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 14798952 - 14799118
Alignment:
Q  239 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 338  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  339 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 405  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  14799052 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 14799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 15245944 - 15246110
Alignment:
Q  239 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 338  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  339 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 405  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  15246044 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 15246110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 142 - 426
Target Start/End: Complemental strand, 29878409 - 29878125
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  29878409 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 29878310  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||| ||||||||  |||| || |  || |||||||    
T  29878309 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccatatcttgttttcaagtggcagccat 29878210  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    | || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||||| |||||||| |||||    
T  29878209 ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg 29878125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 142 - 426
Target Start/End: Original strand, 3921199 - 3921483
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  3921199 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 3921298  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||| ||||| ||  |||| || |  || |||||||    
T  3921299 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgtcccccttatcttgttttcaagtggcagccat 3921398  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    | || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||||| |||||||| |||||    
T  3921399 ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg 3921483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    |||||| || |||||||||||||| |||| ||||  |||||  || || || |||| |||||||| ||||||||| ||||| ||| || |||||||||||    
T  6869201 taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt 6869104  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 318  Q
    ||||| |  ||||| || || |||||||||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  6869103 tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata 6869027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 426
Target Start/End: Original strand, 4497222 - 4497506
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | |  |||  |    
T  4497222 taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact 4497321  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || |||||||| |  || ||||| || ||||| || ||||| |  || || ||||    
T  4497322 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttagtcttcaagtggcacccat 4497421  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    ||||||| | ||| || |||||| ||  | | || ||| | ||||| ||||||||  ||||||| ||||| ||||| || |||||    
T  4497422 caacccccacaaaaggtctacatgcagctttgaatcctctcttgcatccatcaaaggaaaagtagaaagacccaaatcttggttg 4497506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 429
Target Start/End: Original strand, 11318291 - 11318469
Alignment:
Q  251 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 350  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  351 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 429  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  11318391 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 11318469  T

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Target: scaffold0300 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 426
Target Start/End: Complemental strand, 18289 - 18005
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  18289 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 18190  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || |||||||| |  || ||||| || ||||| || || || | ||| || ||||    
T  18189 tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat 18090  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    | ||||| | ||| || |||||| ||  | | |||||| | ||||||||||||||  ||||||| ||||| ||||| ||||||||    
T  18089 ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg 18005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 426
Target Start/End: Original strand, 24676042 - 24676326
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  24676042 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 24676141  T
Q  242 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat 341  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || |||||||| |  || ||||| || ||||| || || || | ||| || ||||    
T  24676142 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat 24676241  T
Q  342 caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    | ||||| | ||| || |||||| ||  | | |||||| | ||||||||||||||  ||||||| ||||| ||||| ||||||||    
T  24676242 ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg 24676326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 40053 - 40153
Alignment:
Q  263 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac 362  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac 40152  T
Q  363 a 363  Q
    |    
T  40153 a 40153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
Q  142 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 241  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || ||||  ||||||| ||||||||| ||||| ||| || |||||||||||    
T  36915439 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt 36915340  T
Q  242 tcaa 245  Q
    ||||    
T  36915339 tcaa 36915336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 426
Target Start/End: Complemental strand, 30964745 - 30964560
Alignment:
Q  241 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 340  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  30964745 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 30964646  T
Q  341 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 426  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  30964645 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 30964560  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 429
Target Start/End: Complemental strand, 43607 - 43429
Alignment:
Q  251 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 350  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  351 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 429  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  43507 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 43429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 429
Target Start/End: Original strand, 18131561 - 18131739
Alignment:
Q  251 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 350  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  351 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 429  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  18131661 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 18131739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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