View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_high_173 (Length: 251)
Name: NF0846_high_173
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_173 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 34525200 - 34525449
Alignment:
| Q |
2 |
atctgagaagctaatttcagtatctcactcatgnnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacggaaaaagaaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34525200 |
atctgagaagctaatttcagtatctcactcatgaagaaaaagtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacagaaaaagaaaa |
34525299 |
T |
|
| Q |
102 |
acacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctat--------ctattctaaga |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34525300 |
acacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctatctattctactattctaaga |
34525399 |
T |
|
| Q |
194 |
acaaagttgacataagcaattcctgagaaaaaatagctctgtttcatctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
34525400 |
acaaagttgacataagcaattcctgagaaaaagtagctctctttcttctc |
34525449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 27631867 - 27632097
Alignment:
| Q |
2 |
atctgagaagctaatttcagtatctcactcatgnnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacggaaaaagaaaa |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
27631867 |
atctgagaagctgatttcagtatctcacacataaagaaaaagtcatttagtaactcaaaagtgaatatttttctgttggtattgcaacagaaa--gaaaa |
27631964 |
T |
|
| Q |
102 |
acacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctatctattctaag |
192 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27631965 |
acacaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaataaagcagttcctcgcaaatgcgcctatctattctaag |
27632064 |
T |
|
| Q |
193 |
aacaaagttgacataagcaattcctgagaaaaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27632065 |
gacaaagttgacataagcaattcctgagaaaaa |
27632097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 34515901 - 34516157
Alignment:
| Q |
2 |
atctgagaagctaatttcagtatctcactcatgnnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacggaaaaagaaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34515901 |
atctgagaagctaatttcagtatctcacacataaagaaaaagtcatttagtaactcaaaagttaatatttttctgttggtattgcaac--agaaagaaaa |
34515998 |
T |
|
| Q |
102 |
acacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctat--------ct |
184 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
34515999 |
acgcaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaataaagcagttcctcgcaaatgcgcctatctattctact |
34516098 |
T |
|
| Q |
185 |
attctaagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcatctc |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
34516099 |
attctaaggacaaagttgacataagcaattcctgagaaaaagtagctctgtttcttctc |
34516157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 34524736 - 34524848
Alignment:
| Q |
60 |
aagtgaatatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaag |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
34524736 |
aagtgaatatttttctgttggtattgcaacagaaaaa----aacgcaatgcctctttttacatgcatcatcaaagttatctgaagatataattaataacg |
34524831 |
T |
|
| Q |
160 |
cagttcctcgcaaatgc |
176 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34524832 |
cagttcctcgcaaatgc |
34524848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 27615937 - 27616058
Alignment:
| Q |
58 |
aaaagtgaatatttttctgttggtattgcaacggaaa--------aagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatata |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||| ||||||||||||| ||| || ||||| |||||||| |
|
|
| T |
27615937 |
aaaagtaaatatttttctgttggtattgcaacagaaagaaaagaaaaaaaaaacgcaatgcctctttttacaagcatcgtcacaactatctaaagatata |
27616036 |
T |
|
| Q |
150 |
attaataaagcagttcctcgca |
171 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
27616037 |
attaataaagcagtttctcgca |
27616058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16 times since January 2019
Visitors: 6046