View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_high_174 (Length: 251)
Name: NF0846_high_174
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_174 |
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| [»] chr5 (9 HSPs) |
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| [»] scaffold0009 (3 HSPs) |
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| [»] scaffold0056 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 22983403 - 22983625
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22983403 |
aatccattgtccatcttttcttatttggaggccttcaacatcattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
22983502 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcattccttgatgaattgcatcttcaaagaattcaactagttcattggttttgatcttca |
228 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22983503 |
acatgctctggttgtggacatggaggatagtaatttatcctcattccttgatgaattgcatcttcaaagaattcaactagttcattggttttgatcttca |
22983602 |
T |
|
| Q |
229 |
gagctttctccatacgaccaatt |
251 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
22983603 |
gagttttctccatacgaccaatt |
22983625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 22933299 - 22933080
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
22933299 |
aatccattgtccatcttttcttatttgaaggccttcaatatcattagcttgaagaaggatggttagcatacccatatcagaatgaggatttagtccaatg |
22933200 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcattccttgatgaattgcatcttcaaagaattcaactagttcattggttttgatcttca |
228 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||||||||||| || ||| ||||| || ||||||||||||||| |||||||||||| |
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| T |
22933199 |
acattctctggttggggacatggagggtagtaattcatcctcattccttgat---ttatatcatcaaataactcaactagttcattgcttttgatcttca |
22933103 |
T |
|
| Q |
229 |
gagctttctccatacgaccaatt |
251 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
22933102 |
aagctttctccatacgaccaatt |
22933080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 23022063 - 23022207
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| | | |||||| |
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|
| T |
23022063 |
aatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatg |
23022162 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcatt |
173 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
23022163 |
acattttctggttggggacaaggaggatagtaattcatcctcatt |
23022207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 22928679 - 22928535
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||||||||||||| | | |||||| |
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| T |
22928679 |
aatccactgtccatcttttcgtatttggagaccttcgatgtcattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatg |
22928580 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcatt |
173 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
22928579 |
acattttctggttggggacaaggaggatagtaattcatcctcatt |
22928535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 21250094 - 21249944
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||||||||| | | |||||| |
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|
| T |
21250094 |
aatccattgtccatcttttcttatttggaggccttctatttcattggcttgtagaaggatggttaaagcaccaacatcagaatgaggattcagtccaata |
21249995 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcattccttga |
179 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||| ||||||| ||||| |
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| T |
21249994 |
acattttctggttgaggacatggaggatacaaattccacctcattgcttga |
21249944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 21350992 - 21350786
Alignment:
| Q |
42 |
tcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggtt |
141 |
Q |
| |
|
|||||||| ||||| |||||||| || | |||| |||| |||||||| || | |||||| |||||||||||| | | |||||| ||||||||||| | |
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|
| T |
21350992 |
tcttttctgatttgaaggccttccacttcattgacttggagaaggatagtaagggcaccagaatcagaatgaggtttgagtccaatgacatgctctggct |
21350893 |
T |
|
| Q |
142 |
gtggacatggaggatagtaattcatcctcattccttgatgaattgcatcttcaaagaattcaactagttcattggttttgatcttcagagctttctccat |
241 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||| || ||||||||| || || || ||||| ||| |||| ||||| |||||||||||||| |
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| T |
21350892 |
ggggacatgggggatagtaattcatcctcattccttgatatat---atcttcaaaaaactcgacaagttcgttgctttttatctttagagctttctccat |
21350796 |
T |
|
| Q |
242 |
acgaccaatt |
251 |
Q |
| |
|
|||||||||| |
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|
| T |
21350795 |
acgaccaatt |
21350786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 21264314 - 21264173
Alignment:
| Q |
32 |
ccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattaca |
131 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || | ||| ||||| ||||||||||| |||||| || ||||||||||||| | | |||||| ||| |
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|
| T |
21264314 |
ccattgtccatcttttcttatttggagaccttcgacgtcatttgcttggagaaggatggtcaaggcagccgcatcagaatgaggattcagtccaatgaca |
21264215 |
T |
|
| Q |
132 |
tgctctggttgtggacatggaggatagtaattcatcctcatt |
173 |
Q |
| |
|
| |||||||| ||||| ||||| ||| | ||||||||||| |
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|
| T |
21264214 |
ttttctggttggggacagggagggtagcatgtcatcctcatt |
21264173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 21211899 - 21211830
Alignment:
| Q |
104 |
atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctcatt |
173 |
Q |
| |
|
||||||||||||| | | |||||| || | |||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
21211899 |
atcagaatgaggattaagtccaatgactttgtctggttggggacaaggaggatagtaattcatcctcatt |
21211830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 22963199 - 22963264
Alignment:
| Q |
104 |
atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct |
169 |
Q |
| |
|
|||||| |||||| | | |||||| || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
22963199 |
atcagagtgaggattaagtccaataacttgttctggttgaggacatggaggatagtaattcatcct |
22963264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 23263 - 23413
Alignment:
| Q |
29 |
aatccattgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||| | || ||||||||| ||| | | |||||| |
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|
| T |
23263 |
aatccattgtccatcttttcttatttggaggccttcaatgtcattggcttggagaaggatagttaagcaatccgcatcagaatgcggattcaatccaatg |
23362 |
T |
|
| Q |
129 |
acatgctctggttgtggacatggaggatagtaattcatcctcattccttga |
179 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
23363 |
acattttctggttggggacaaggaggatagtaattcatcctcgttgcttga |
23413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 215276 - 215342
Alignment:
| Q |
104 |
atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctc |
170 |
Q |
| |
|
||||||||||||| | | |||||| || || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
215276 |
atcagaatgaggattgagtccaatgacttgatctggttgaggacatggaggatagtaattcatcctc |
215342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 258385 - 258525
Alignment:
| Q |
38 |
tccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctct |
137 |
Q |
| |
|
|||||| ||| ||||||| || ||||| | | |||| |||| ||||||||||| | || ||| ||||||||||||| | | |||||| || || ||| |
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|
| T |
258385 |
tccatccttttttatttgaagtccttccatttcattgacttggagaaggatggtaagggtaccagcatcagaatgaggattcagtccaatgacttgatct |
258484 |
T |
|
| Q |
138 |
ggttgtggacatggaggatagtaattcatcctcattccttg |
178 |
Q |
| |
|
||||| ||||| ||||| || |||||||| |||||| |||| |
|
|
| T |
258485 |
ggttgaggacaaggagggtaataattcattctcattgcttg |
258525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 62409 - 62549
Alignment:
| Q |
38 |
tccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctct |
137 |
Q |
| |
|
|||||||||||||| ||| |||||||||| | |||| ||| ||||| ||||| | ||||| | ||||||||||||| | | |||||| || || ||| |
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|
| T |
62409 |
tccatcttttcttacttgaaggccttcaatttcattgagttggagaagaatggtaagagcaccaacatcagaatgaggattgagtccaatgacttgttct |
62508 |
T |
|
| Q |
138 |
ggttgtggacatggaggatagtaattcatcctcattccttg |
178 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
62509 |
ggttgaggacatggaggatagtaattcatcctcattgcttg |
62549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 26914331 - 26914406
Alignment:
| Q |
104 |
atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctcattccttga |
179 |
Q |
| |
|
||||||||||||| | | |||||| || | |||||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
26914331 |
atcagaatgaggattgagtccaatgactttgtctggttggggacaaggaggatagtaattcatcctcattgcttga |
26914406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 8855 - 8786
Alignment:
| Q |
104 |
atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctcatt |
173 |
Q |
| |
|
||||||||||||| | |||||| || ||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
8855 |
atcagaatgaggatcaagtccaatgacttgctctggttgaggacatggagggtaataattcatcctcatt |
8786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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