View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_high_182 (Length: 236)
Name: NF0846_high_182
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_182 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 42217803 - 42217939
Alignment:
| Q |
20 |
cttgttgtgtgtagtttatggtatgtatttggaaacacagataccacattctcctcctctgcattcaattaaattccacaatattggatat-atgcataa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42217803 |
cttgttgtgtgtagtttatggtatgtatttggaaacacagataccacattctcctcctctgcattcaattaaattccacaatattggatataatgcataa |
42217902 |
T |
|
| Q |
119 |
tcataattattattggagaattaatttgtcccttcat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42217903 |
tcataattattattggagaattaatttgtcccttcat |
42217939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 33 times since January 2019
Visitors: 6042