View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_24 (Length: 582)
Name: NF0846_high_24
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 73 - 554
Target Start/End: Complemental strand, 39366566 - 39366085
Alignment:
| Q |
73 |
aatagttaacaatagcataggctatgggttaattaataatcagtaattcagtatgctatttttagcctaaagacagttgcatttatttggtatattgcgt |
172 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39366566 |
aataattaacaatagcatcggctatgggttaat----aatcagtaattcagtatgctatttttagcttaaagacagttgcatttatttggtatattgcgt |
39366471 |
T |
|
| Q |
173 |
gacacatgatatgaatcaca----tgctagagatgttaggataataatcccatctagtctagggttctgaaacatgagctgtggctgagccaaaaacaca |
268 |
Q |
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|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39366470 |
gacacatgatatgaatcatacatatgcttgagatgttaggataataatcccatctagtctagggttctgaaacatgagctgtggctgagccaaaaacaca |
39366371 |
T |
|
| Q |
269 |
ttagtgagtttcctttcttggtcaaagagaatcgtatgttagaggagttaggaaaatcatagtagagtatatgtcgagtagaaatcttccctatagcnnn |
368 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
39366370 |
ttagtgagtttcctttcttggtcaaagagaatcatatgttagaggagttaggaaaatcatattagagtatatgtcgagtagaaatcttctctatagtttt |
39366271 |
T |
|
| Q |
369 |
nnnnnaaaagatcaagcttcatcactagtacatttttaattgtacaaaatacataa--ttttaatcttgctgcactgtattatacaaaaatttataataa |
466 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39366270 |
tttttaaaagatcaagcttcatcaccagtacatttttaattgtacaaaatacataattttttaatcttgctgcactgtattatacaaaaatttataataa |
39366171 |
T |
|
| Q |
467 |
ctagaaaagnnnnnnnnnnncttcaaaaataaaagagagaagaaaatcggtgatgcaatttgcaaacacaaagtcaaccgcatatatt |
554 |
Q |
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| T |
39366170 |
ctagaaaagtttttttttttcttcaaaaataaa--agagaagaaaatcggtgatgcaatttgcaaacacaaagtcaaccgcatatatt |
39366085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 39366638 - 39366594
Alignment:
| Q |
30 |
tgtgcttatgtggataccaaaacacaatgctgcatcacatcacaa |
74 |
Q |
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|||||||||||||| ||| ||||||||||| |||||||||||||| |
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| T |
39366638 |
tgtgcttatgtggacacccaaacacaatgcagcatcacatcacaa |
39366594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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