View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_29 (Length: 578)
Name: NF0846_high_29
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 457 - 557
Target Start/End: Original strand, 8153927 - 8154027
Alignment:
| Q |
457 |
tattccaagattctcgaaacggcagggcaatctaataaaaataaagttatttcaaatggaagtattcaaaagacacaaatgctacagcttgtaactgtaa |
556 |
Q |
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| T |
8153927 |
tattccaagattctcgaaacggcagggcaatctattaaaaataaagttatttcaaatggaagtattcaaaagacacaaatgctacagcttgtaactgtaa |
8154026 |
T |
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| Q |
557 |
c |
557 |
Q |
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| T |
8154027 |
c |
8154027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 8152756 - 8152906
Alignment:
| Q |
28 |
catgactttcatcagctaggctcacannnnnnn-atttcaaacaaatcagaaattgttatttaatctt-aggtgaggtcgggttttttggtatagcaata |
125 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |
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| T |
8152756 |
catgactttcatccgctaggctcacattttttttatttcaaacaaatcagaaattgttatctaatcctgaggtgaggtcgggttttttggtatagcaata |
8152855 |
T |
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| Q |
126 |
cccaacaaaaagtgaatgccttaataagtgaaaaatctgaggcgtccaatt |
176 |
Q |
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| T |
8152856 |
cccaacaaaaagtgaatgccttaataagtcaaaaatctgagccgtccaatt |
8152906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 8153706 - 8153764
Alignment:
| Q |
209 |
tttcctatgataagaaagaactcaactttctcatattaaaccctaccatagactcaagc |
267 |
Q |
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| T |
8153706 |
tttcctatgataagaaagaactcaactttctcatactaaatcccaccatagactcaagc |
8153764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 4833865 - 4833929
Alignment:
| Q |
185 |
ttatatctatggtattggttaaactttcctatgataagaaagaactcaactttctcatattaaac |
249 |
Q |
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| T |
4833865 |
ttatatctatggttgtggttgaactttcccatcataagaaagaacttttctttcccatattaaac |
4833929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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