View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_high_47 (Length: 509)
Name: NF0846_high_47
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 4027889 - 4027388
Alignment:
| Q |
1 |
ctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027889 |
ctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaat |
4027790 |
T |
|
| Q |
101 |
ggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaactttaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4027789 |
ggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaactttaagatt |
4027690 |
T |
|
| Q |
201 |
attcaatgaaaccgtatgtaatcatgatttttacctt-ttcgttctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgacc |
299 |
Q |
| |
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||||||||||| ||||||||||||| ||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027689 |
tttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgacc |
4027590 |
T |
|
| Q |
300 |
ttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaatgttaatttgcagatattagagcaaactatcattttggtcct |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4027589 |
ttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaatattaatttgcagatattagagcaaactatcattttggtcct |
4027490 |
T |
|
| Q |
400 |
taatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcctatg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4027489 |
taatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcctctg |
4027390 |
T |
|
| Q |
500 |
at |
501 |
Q |
| |
|
|| |
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|
| T |
4027389 |
at |
4027388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 4013649 - 4013500
Alignment:
| Q |
21 |
tcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagag |
120 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| |||||||||||||||||| |||| | ||| | |||||||||||||||||||||||||| |||| ||| |
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| T |
4013649 |
tcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttccggag |
4013550 |
T |
|
| Q |
121 |
cttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgt |
170 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| | ||||||||||| |
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|
| T |
4013549 |
cttctcaaataatatatgctgtaatctctgcttattgatttcgaatttgt |
4013500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 501
Target Start/End: Original strand, 3950991 - 3951488
Alignment:
| Q |
4 |
tttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggc |
103 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| | ||| |||| |||||||| |||||||| |||| |||||| |||||||||| ||||||| |
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| T |
3950991 |
tttcgttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagagac--agaaagattgttcgtagtgcacttgttccaatccaatggc |
3951088 |
T |
|
| Q |
104 |
gtatttgttttccagagcttctcaaataatttatgctgtaatg--tctgcttattaaattcgaatttgtg-ttacgaattgatcctgaaactttaaaatt |
200 |
Q |
| |
|
|||||| ||| |||| ||||||| ||| |||||||||| ||||||||| || ||| |||||||| ||| ||||| || |||||| ||| ||| |
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|
| T |
3951089 |
atatttgccttctggagcctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaatttgtggttatgaattaatgctgaaaattttcgatt |
3951188 |
T |
|
| Q |
201 |
attcaatgaaaccgtatgtaatcatgatttttaccttttcgttctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgacct |
300 |
Q |
| |
|
|||| || || ||||||||| || |||| | |||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||||||| |
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|
| T |
3951189 |
tatcaacgagacagtatgtaattatagttttca-------gttctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgacct |
3951281 |
T |
|
| Q |
301 |
tcct---tatattctatgtcctgcacactt--atgtagaaatcattgtataatagaactaaatgttaatt-tgcagatattagagcaaactatcattttg |
394 |
Q |
| |
|
|| | ||||| ||||||||||||||| ||| ||||| | |||||||||| |||||| || | | |||||| ||||||| ||||| ||||||| |
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|
| T |
3951282 |
tcttccatatatataatgtcctgcacacttttatgcagaaaccgttgtataataatactaaaaatttactctgcagaaattagagtaaact--cattttg |
3951379 |
T |
|
| Q |
395 |
gtccttaatgtcaagaattgggacttgaaaaatt--tctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaatt |
492 |
Q |
| |
|
||||||| |||||||||||||||||||||| || || || |||||| || |||||| | | || | ||| ||||||||||||||||||||||||| || |
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|
| T |
3951380 |
ttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagctcggagggattttaaccagtaaacttttatgagttttaacaacttagagtt |
3951479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 3991341 - 3991167
Alignment:
| Q |
22 |
cttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagc |
121 |
Q |
| |
|
|||||||||||||||||| || ||| |||| ||| |||||||||||||| |||||||||| | ||||||||||||||||||| |||||| |||| |||| |
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| T |
3991341 |
cttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtcttccggagc |
3991242 |
T |
|
| Q |
122 |
ttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaactttaa |
196 |
Q |
| |
|
||| |||||| ||||||||||| |||||||||| | || |||||| ||||| |||| || || ||||||||| |
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|
| T |
3991241 |
ttcatcaataatatatgctgtaatctctgcttattgattttgaatttccgttacaaattaatgctaaaactttaa |
3991167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 4005402 - 4005242
Alignment:
| Q |
22 |
cttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagc |
121 |
Q |
| |
|
|||||||||||||||||| | ||| |||| |||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||| | ||| || | |
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|
| T |
4005402 |
cttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatcttctggaac |
4005303 |
T |
|
| Q |
122 |
ttctcaaataatttatgctgtaat--gtctgcttattaaattcgaatttgtgttacgaatt |
180 |
Q |
| |
|
||||||| |||| ||||||||||| |||| ||||||||||||||||||||||| ||||| |
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|
| T |
4005302 |
ttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgtgttatgaatt |
4005242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 4013366 - 4013305
Alignment:
| Q |
241 |
gttctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
4013366 |
gttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc |
4013305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 4013184 - 4013089
Alignment:
| Q |
408 |
agaattgggacttgaaaaatttctca--tgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcctatgat |
501 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||| | ||| || ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
4013184 |
agaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaattgcctctgat |
4013089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 3990654 - 3990563
Alignment:
| Q |
259 |
ttgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgta-gaaatcattgtataatag |
350 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
3990654 |
ttgtatgagctttgaagaaagaccaaaacttttttgtgaact---ttatattctctgtcttgcacacttttatgcaggaaatcattgtataatag |
3990563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 3990312 - 3990265
Alignment:
| Q |
446 |
agggactatgactaataagcttttatgagttttaacaacttagaattgc |
494 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |||||||||||| |
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|
| T |
3990312 |
agggattatgactaataaacttttatgagtcttaac-acttagaattgc |
3990265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 13400594 - 13400464
Alignment:
| Q |
12 |
cggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||| |||| || ||||| ||||||||| ||||| || || |||||||||| ||||||| ||||| | |
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|
| T |
13400594 |
cggtaataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcgc--ttgttccaatccaatggcatattttt |
13400497 |
T |
|
| Q |
112 |
tttccagagcttctcaaataatttatgctgtaa |
144 |
Q |
| |
|
||| |||| |||| || ||| |||||||||| |
|
|
| T |
13400496 |
cttctggagcctctccaacaatatatgctgtaa |
13400464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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