View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_50 (Length: 486)

Name: NF0846_high_50
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_50
NF0846_high_50
[»] chr3 (10 HSPs)
chr3 (189-434)||(46749754-46749998)
chr3 (14-120)||(46749623-46749729)
chr3 (344-426)||(6976138-6976220)
chr3 (346-408)||(10055134-10055196)
chr3 (348-428)||(7319022-7319102)
chr3 (344-426)||(12103996-12104078)
chr3 (344-426)||(12105190-12105272)
chr3 (348-428)||(45135641-45135721)
chr3 (344-426)||(23535698-23535780)
chr3 (344-426)||(50899327-50899409)
[»] chr2 (6 HSPs)
chr2 (276-428)||(34027590-34027729)
chr2 (346-428)||(21988196-21988278)
chr2 (276-355)||(20156488-20156566)
chr2 (282-348)||(1188814-1188880)
chr2 (337-386)||(37982519-37982568)
chr2 (389-428)||(20156417-20156456)
[»] chr7 (12 HSPs)
chr7 (276-428)||(40098360-40098499)
chr7 (344-428)||(19251967-19252051)
chr7 (14-73)||(3634577-3634636)
chr7 (344-426)||(10617317-10617399)
chr7 (282-336)||(48999537-48999591)
chr7 (296-428)||(9824749-9824879)
chr7 (296-428)||(10726674-10726804)
chr7 (287-320)||(3635023-3635056)
chr7 (344-428)||(48152405-48152489)
chr7 (361-426)||(3796777-3796842)
chr7 (344-393)||(45272851-45272900)
chr7 (344-425)||(45278149-45278230)
[»] chr4 (14 HSPs)
chr4 (282-428)||(37369504-37369660)
chr4 (346-428)||(24887396-24887478)
chr4 (293-428)||(16019749-16019884)
chr4 (282-377)||(28099796-28099891)
chr4 (345-426)||(9163619-9163700)
chr4 (344-426)||(20021874-20021956)
chr4 (348-428)||(5104883-5104963)
chr4 (346-426)||(12913791-12913871)
chr4 (362-425)||(7853885-7853947)
chr4 (344-426)||(11090709-11090791)
chr4 (344-426)||(56444442-56444524)
chr4 (346-425)||(20539847-20539925)
chr4 (348-426)||(36478887-36478965)
chr4 (344-425)||(28371346-28371427)
[»] chr5 (4 HSPs)
chr5 (282-428)||(9688442-9688588)
chr5 (289-428)||(28593073-28593222)
chr5 (346-428)||(9840048-9840130)
chr5 (370-428)||(28346606-28346664)
[»] chr1 (6 HSPs)
chr1 (282-428)||(42658452-42658610)
chr1 (276-355)||(1923240-1923318)
chr1 (346-428)||(27199018-27199100)
chr1 (344-426)||(9577170-9577252)
chr1 (344-428)||(26284255-26284339)
chr1 (389-458)||(1923139-1923208)
[»] chr8 (7 HSPs)
chr8 (282-377)||(23811795-23811890)
chr8 (329-426)||(23609496-23609593)
chr8 (346-428)||(24319158-24319240)
chr8 (344-426)||(39189525-39189607)
chr8 (334-407)||(29930398-29930471)
chr8 (175-253)||(23811686-23811766)
chr8 (344-426)||(4949632-4949714)
[»] chr6 (3 HSPs)
chr6 (276-355)||(30878662-30878740)
chr6 (346-428)||(8634758-8634840)
chr6 (389-428)||(30878772-30878811)
[»] scaffold0287 (2 HSPs)
scaffold0287 (14-73)||(11449-11508)
scaffold0287 (287-320)||(11029-11062)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 189 - 434
Target Start/End: Original strand, 46749754 - 46749998
Alignment:
Q  189 tcttaaaaaataattggcaataatttattatgacagattttagaaatgaatataatagtgtagtatagtgttgnnnnnnnnnnnnnncatccttaagcat 288  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||              | |||||||||||    
T  46749754 tcttaaaaaataattggcaataatttattatgacacattttagaaatgaatataatagtgtagtacagtgttgaaaaaaataaaaa-cgtccttaagcat 46749852  T
Q  289 ctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaat 388  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46749853 ctaggaaaaatacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaat 46749952  T
Q  389 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataa 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46749953 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataa 46749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 46749623 - 46749729
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgttctacttcaccagactacctcgtcaaataaaatccctatca 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46749623 agaggaaggtcatttattaccaacggtcgattgtgagactaccttcaccggaataatgttctacttcaccagactacctcgtcaaataaaatccctatca 46749722  T
Q  114 gttatac 120  Q
     ||||||    
T  46749723 attatac 46749729  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 6976138 - 6976220
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||||||| | ||| |||||||| |||||||||||||||||    
T  6976138 tttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcttgatagtcttttaaaatcataaaagtcattaaaatc 6976220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 10055196 - 10055134
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatc 408  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  10055196 taaaatctttgaatataaatcctttgaaatccaaattacaaatcttgagaatcttttaaaatc 10055134  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 7319022 - 7319102
Alignment:
Q  348 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||| |||||||||||||||||||    
T  7319022 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaagtcattaaaatctt 7319102  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 12103996 - 12104078
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||||| ||||||||||||||  |||||  || | ||| |||||||| | |||||||||||||||    
T  12103996 tttaaaatcttatgatgtaaatccattgaaatccaaattgaaaatcccgatagtcttttaaaatcatgaaagtcattaaaatc 12104078  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 12105190 - 12105272
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||| ||| ||| ||||||| ||||||||||||||  |||| |||| | ||| |||||||| | |||||||||||||||    
T  12105190 tttaaaatattatgatgtaaatccattgaaatccaaattgaaaattttgatagtcttttaaaatcatgaaagtcattaaaatc 12105272  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 45135641 - 45135721
Alignment:
Q  348 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||  |||||||||||||||||||    
T  45135641 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaattttaaaagtcattaaaatctt 45135721  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 23535780 - 23535698
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    ||||||||||||   | ||||||| ||||||||||||||  ||||||||| | | | |||||||| |||||||| ||||||||    
T  23535780 tttaaaatcttatagtgtaaatccattgaaatccaaattgtaaatcttgatagttttttaaaatcataaaagtcgttaaaatc 23535698  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 50899409 - 50899327
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||| | ||||||||||||||  ||||  ||| | ||| |||||||| ||||| |||||||||||    
T  50899409 tttaaaatcttatgatgtaaattcattgaaatccaaattgaaaattctgatagtcttttaaaatcataaaaatcattaaaatc 50899327  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 34027729 - 34027590
Alignment:
Q  276 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaat 375  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  34027729 catccataagcatctaggaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttaagatataaatcccttgaaat 34027631  T
Q  376 ccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |            ||||||||||| |||||||| |||||||||||||||||||    
T  34027630 c------------cttgagaatcttttaaaatcctaaaagtcattaaaatctt 34027590  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 21988196 - 21988278
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||| ||| ||||||| || |||||| ||||||||||||| | ||||| |||||||| |||||||||||||||||||    
T  21988196 taaaatcttaagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatcttaaaagtcattaaaatctt 21988278  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 20156566 - 20156488
Alignment:
Q  276 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 355  Q
    ||||| ||||||| || |||||||||||||||||||||||||| |||| || |||||||||| |||  ||||||||||||    
T  20156566 catccataagcatgtatgaaaaacacaattaacttcttgatat-aatctatcgaaatcttgatagtattttaaaatctta 20156488  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 1188880 - 1188814
Alignment:
Q  282 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaa 348  Q
    |||||||||| || |||||||||||||||||| |||||||||| | |||||||||| |||| |||||    
T  1188880 taagcatctaagataaacacaattaacttcttaatataaatccttggaaatcttgatagtcttttaa 1188814  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 37982519 - 37982568
Alignment:
Q  337 aaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaa 386  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  37982519 aaagtcttataaaatcttaggatataaattccttgaaatccaaattacaa 37982568  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 20156456 - 20156417
Alignment:
Q  389 cttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  20156456 cttgagaatcttttaaaatcctaaaagtcattaaaatctt 20156417  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 40098360 - 40098499
Alignment:
Q  276 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaat 375  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  40098360 catccataagcatctatgaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttaagatataaatcccttgaaat 40098458  T
Q  376 ccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |            ||||||||||| |||||||| |||||||||||||||||||    
T  40098459 c------------cttgagaatcttttaaaatcctaaaagtcattaaaatctt 40098499  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 19251967 - 19252051
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||| | ||| ||| |||||||| | |||||||||||||||||    
T  19251967 tttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcctaagagtcttttaaaatcatgaaagtcattaaaatctt 19252051  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 3634577 - 3634636
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgtt 73  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| || |||||||||    
T  3634577 agaggaaggtcgtttgttaccaacggtggattgtgagactcccttcatcaaaataatgtt 3634636  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 10617317 - 10617399
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||| ||| ||| ||||||| ||||||| ||||||  ||||| ||| |||||||||||||| | |||||||||||||||    
T  10617317 tttaaaattttatgatgtaaatccattgaaattcaaattgtaaatcatgataatctcttaaaatcatgaaagtcattaaaatc 10617399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 48999537 - 48999591
Alignment:
Q  282 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttg 336  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||||||||    
T  48999537 taagcacctaggaaaaacacaattaaattattgatataaatcctttgaaatcttg 48999591  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 428
Target Start/End: Complemental strand, 9824879 - 9824749
Alignment:
Q  296 aaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgaga 395  Q
    |||||||||||| |||||| |||||||||| ||||||||||| |||   ||||||| ||| |||||| ||   || ||||||||||||||| |||| | |    
T  9824879 aaacacaattaatttcttgttataaatccagtgaaatcttgatagtatcttaaaattttatgatatatat--attaaaatccaaattacaattctttata 9824782  T
Q  396 atctcttaaaatcgtaaaagtcattaaaatctt 428  Q
     ||  |||||||| ||||| ||||| |||||||    
T  9824781 gtcgtttaaaatcttaaaactcattgaaatctt 9824749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 428
Target Start/End: Complemental strand, 10726804 - 10726674
Alignment:
Q  296 aaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgaga 395  Q
    |||||||||||| |||||| |||||||||| ||||||||||| |||   ||||||| ||| |||||| ||   || ||||||||||||||| |||| | |    
T  10726804 aaacacaattaatttcttgttataaatccagtgaaatcttgatagtatcttaaaattttatgatatatat--attaaaatccaaattacaattctttata 10726707  T
Q  396 atctcttaaaatcgtaaaagtcattaaaatctt 428  Q
     ||  |||||||| ||||| ||||| |||||||    
T  10726706 gtcgtttaaaatcttaaaactcattgaaatctt 10726674  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 3635023 - 3635056
Alignment:
Q  287 atctaggaaaaacacaattaacttcttgatataa 320  Q
    ||||||||||||||||||||||||||||||||||    
T  3635023 atctaggaaaaacacaattaacttcttgatataa 3635056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 48152489 - 48152405
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||| | | |||| |||||| ||||||| ||||||||||||||| | | | | |||||||| ||||||| |||||||||||    
T  48152489 tttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaatagttttttaaaatcttaaaagtaattaaaatctt 48152405  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 3796842 - 3796777
Alignment:
Q  361 taaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| ||||||||||| |||||    
T  3796842 taaatccattgaaatccaaattgtaaatcctgatagtcttttaaaatcataaaagtcatttaaatc 3796777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 45272851 - 45272900
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttga 393  Q
    |||||||||||| ||| ||||||| ||||||||||||||| |||| ||||    
T  45272851 tttaaaatcttatgatgtaaatccattgaaatccaaattataaattttga 45272900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 45278149 - 45278230
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 425  Q
    |||||||| ||| ||| ||||||| ||||||||||||||  ||||||||| | ||| | ||||||   ||||||||||||||    
T  45278149 tttaaaatgttatgatgtaaatccattgaaatccaaattgtaaatcttgatagtctttaaaaatcactaaagtcattaaaat 45278230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 282 - 428
Target Start/End: Complemental strand, 37369660 - 37369504
Alignment:
Q  282 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta----------ggatataaatcccttg 371  Q
    ||||||||||| ||||||||||||   || ||||||||||||| ||||||| |||| |||| ||||||||||||          | ||||||||||||||    
T  37369660 taagcatctagaaaaaacacaattggtttgttgatataaatcctttgaaattttgatagtcttttaaaatcttataaaatctcagaatataaatcccttg 37369561  T
Q  372 aaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  37369560 aaatccaaattacaaatcttaagaatcttttaaaatcttaaaagtcattaaaatctt 37369504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 24887478 - 24887396
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||    
T  24887478 taaaagcttaggatataaatcccttgaaatccaaattacaaatcttaagtatcttttaaaatcttaaaagtcattaaaatctt 24887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 428
Target Start/End: Original strand, 16019749 - 16019884
Alignment:
Q  293 gaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttg 392  Q
    |||||||||||||  ||||||| ||||||||  |||||||||||| |||| |||||||||||| |||| |||||| || ||||||| || | |||| |||    
T  16019749 gaaaaacacaattgccttcttgttataaatcttttgaaatcttgatagtcttttaaaatcttatgatacaaatcctttaaaatccatatgataaattttg 16019848  T
Q  393 agaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    | | ||| |||||||| |||||||||| ||||||||    
T  16019849 atagtcttttaaaatcttaaaagtcatgaaaatctt 16019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 377
Target Start/End: Complemental strand, 28099891 - 28099796
Alignment:
Q  282 taagcatctaggaaaaacac----aattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatcc 377  Q
    ||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||   |||| |||||||||||| |||||||||||||||||||||    
T  28099891 taagcatctaggaaaaacacgcacaattaacttcttgatataa-tccattgaaatctt---agtcttttaaaatcttaagatataaatcccttgaaatcc 28099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 9163619 - 9163700
Alignment:
Q  345 ttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    ||||||||||| | ||||||||| ||||||||||||||  ||||||||| | ||| |||||||| |||||||||||||||||    
T  9163619 ttaaaatcttatggtataaatccattgaaatccaaattgtaaatcttgatattcttttaaaatcataaaagtcattaaaatc 9163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 20021874 - 20021956
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  20021874 tttaaaatcttatgatttaaatccattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 20021956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 5104883 - 5104963
Alignment:
Q  348 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||| |||||||||||||||||||    
T  5104883 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaagtcattaaaatctt 5104963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 12913791 - 12913871
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||| ||| ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  12913791 taaaatcttatgatgtaaatccattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 12913871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 7853947 - 7853885
Alignment:
Q  362 aaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 425  Q
    |||||| |||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||    
T  7853947 aaatcctttgaaatccaaattacaaat-ttgatagtcttttaaaatcttaaaagtcattaaaat 7853885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 11090709 - 11090791
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||| ||| | | ||| |||||||| | ||||||||| |||||    
T  11090709 tttaaaatcttatgatgtaaatccattgaaatccaaattataaaacttcatagtcttttaaaatcatgaaagtcattgaaatc 11090791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 56444524 - 56444442
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| |||||||  |||||||||||||| ||||| ||| | ||| |||||||| | ||| |||||||||||    
T  56444524 tttaaaatcttatgatgtaaatccaatgaaatccaaattaaaaatcctgatagtcttttaaaatcatgaaaatcattaaaatc 56444442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 20539847 - 20539925
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 425  Q
    |||||||||| ||||||| |||  || ||| |||||||||||| |||| ||||| |||||||| |||||||| |||||||    
T  20539847 taaaatcttatgatataa-tcctatgtaattcaaattacaaattttgataatcttttaaaatcttaaaagtcgttaaaat 20539925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 36478965 - 36478887
Alignment:
Q  348 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||| ||| ||| ||||||| |||||||| |||||  ||||||||| | ||| |||||| ||| |||||||||||||||    
T  36478965 aaattttatgatgtaaatccattgaaatctaaattgtaaatcttgatagtcttttaaaaccgtgaaagtcattaaaatc 36478887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 28371346 - 28371427
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 425  Q
    |||||||||||| ||| ||||||  |||||||||| |||  ||||| ||| ||||| |||||| | | ||||||||||||||    
T  28371346 tttaaaatcttatgatgtaaatctattgaaatccatattgaaaatcctgataatcttttaaaaccatcaaagtcattaaaat 28371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 428
Target Start/End: Complemental strand, 9688588 - 9688442
Alignment:
Q  282 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaat 381  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| |||||||||||| |||| |||||||||||| |||  |||||| |||||||||| ||    
T  9688588 taagcatctaggaaaaatacaattgccttcttgttataaatcctttgaaatcttgatagtcttttaaaatcttatgatgcaaatcctttgaaatccatat 9688489  T
Q  382 tacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
     | ||||||||| | ||| |||||||| |||||||||| | ||||||    
T  9688488 gataaatcttgatagtcttttaaaatcttaaaagtcatgacaatctt 9688442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 28593222 - 28593073
Alignment:
Q  289 ctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttagga----------tataaatcccttgaaatcca 378  Q
    |||| |||||||||||| |||| ||||||||||||| |||||||| ||| |||| ||||||||||||  |          ||||||||| ||||||||||    
T  28593222 ctagaaaaaacacaattgacttgttgatataaatcctttgaaatcctgatagtcttttaaaatcttataaaatctcataatataaatcctttgaaatcca 28593123  T
Q  379 aattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  28593122 aattacaaatcttgagaatcttttaaaatcttaaaagtcattaaaatctt 28593073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 9840130 - 9840048
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||  ||| ||||||| || |||||| ||||||||||||| | ||||| |||||||| ||||||||||| |||||||    
T  9840130 taaaatcttcagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatcttaaaagtcattcaaatctt 9840048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 428
Target Start/End: Complemental strand, 28346664 - 28346606
Alignment:
Q  370 tgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||| |||||||||||| |||| | ||| |||||||| |||||||||||||||||||    
T  28346664 tgaaattcaaattacaaattttgatagtcttttaaaatcttaaaagtcattaaaatctt 28346606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 428
Target Start/End: Original strand, 42658452 - 42658610
Alignment:
Q  282 taagcatctaggaaaaacacaattaactt--cttgatataaatccattgaaatcttgaaagtcatttaaa----------atcttaggatataaatccct 369  Q
    |||||||| |||||||||||||||||  |  |||||||||||||| |||||||||||| ||||  |||||          ||||||| |||||||||| |    
T  42658452 taagcatccaggaaaaacacaattaatatatcttgatataaatcctttgaaatcttgatagtctcttaaaatcttataaaatcttagtatataaatccat 42658551  T
Q  370 tgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  42658552 tgaaatccaaattacaaatcttgagaatcttttaaaatcttaaaagtcattgaaatctt 42658610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 1923318 - 1923240
Alignment:
Q  276 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 355  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  1923318 catccataagcatctaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtcttttaaaatctta 1923240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 27199018 - 27199100
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||||| | ||| |||||||| |||||||||||||||||||    
T  27199018 taaaatcttgtgatataaatcctttgaaatccaaattaccaatcttgatagtcttttaaaatcttaaaagtcattaaaatctt 27199100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 9577252 - 9577170
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    ||||||||||||  || ||||||| ||||||||||||||| ||||| ||| | ||| |||||||| | |||||||||||||||    
T  9577252 tttaaaatcttataatgtaaatccattgaaatccaaattataaatcctgaaagtcttttaaaatcatgaaagtcattaaaatc 9577170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 26284255 - 26284339
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||| | ||||||||||  ||||||||||||||| || | |||| | ||| |||||||| ||||||| |||||||||||    
T  26284255 tttaaaatctcatgatataaatcatttgaaatccaaattataagttttgatagtcttttaaaatcttaaaagtaattaaaatctt 26284339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 458
Target Start/End: Complemental strand, 1923208 - 1923139
Alignment:
Q  389 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataannnnnnnaaatccactagactttt 458  Q
    ||||||||||| |||||||| |||||||||||||||||||  ||||       |||||||||||||||||    
T  1923208 cttgagaatcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaatccactagactttt 1923139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 23811795 - 23811890
Alignment:
Q  282 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatcc 377  Q
    |||| ||||||||||||||||||||||||||| || |||| || || ||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  23811795 taagtatctaggaaaaacacaattaacttcttaatctaaaccctttaaaatcttgatagtcttttaaaatcttagtatataaatcccttgaaatcc 23811890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 23609496 - 23609593
Alignment:
Q  329 aaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgt-aaaagtcattaaaatc 426  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| | ||||||||||||||||    
T  23609496 aaatcttgatagtcttttaaaattttaggatataaatcccttgaaatccaaattacaaaccttgaaaatat-ttaaaatcttaaaaagtcattaaaatc 23609593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 24319158 - 24319240
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||    
T  24319158 taaaatcttaggatatatatttcttgaaatccaaattacaaatcttgaaaatattttaaaatcttaaaagtcattaaaatctt 24319240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 39189607 - 39189525
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||| ||||||  ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  39189607 tttaaaatcttatgatgtaaatctattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 39189525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 29930471 - 29930398
Alignment:
Q  334 ttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaat 407  Q
    |||||| ||||||||||||||| ||| ||||||| |||||||||||||   ||||||||| | ||| |||||||    
T  29930471 ttgaaaatcatttaaaatcttatgatgtaaatccattgaaatccaaatagtaaatcttgatagtcttttaaaat 29930398  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 23811686 - 23811766
Alignment:
Q  175 tacacgtagactcgtcttaaaaaataa-ttggcaataatttattat-gacagattttagaaatgaatataatagtgtagta 253  Q
    ||||| |||| ||||||||||||| || ||||| | |||||||||  |||| ||||||||||||||||||||||| |||||    
T  23811686 tacacatagagtcgtcttaaaaaaaaaattggctaaaatttattaccgacacattttagaaatgaatataatagtatagta 23811766  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 4949714 - 4949632
Alignment:
Q  344 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 426  Q
    |||||||||||| ||||||||||  ||||||||||||||| |||| || | | ||| |||||||| | ||| | |||||||||    
T  4949714 tttaaaatcttatgatataaatctattgaaatccaaattataaattttaatagtcttttaaaatcatcaaaattattaaaatc 4949632  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 30878662 - 30878740
Alignment:
Q  276 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 355  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  30878662 catccataagcatttaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtcttttaaaatctta 30878740  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 8634840 - 8634758
Alignment:
Q  346 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    |||||||||| ||| ||||||| || ||||||  |||||||||||| | ||||| |||||||| ||||||||||| |||||||    
T  8634840 taaaatcttaagatgtaaatcctttaaaatccctattacaaatcttaacaatcttttaaaatcttaaaagtcattcaaatctt 8634758  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 30878772 - 30878811
Alignment:
Q  389 cttgagaatctcttaaaatcgtaaaagtcattaaaatctt 428  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  30878772 cttgagaatcttttaaaatcctaaaagtcattaaaatctt 30878811  T

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Target: scaffold0287 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 11508 - 11449
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgtt 73  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| || |||||||||    
T  11508 agaggaaggtcgtttgttaccaacggtggattgtgagactcccttcatcaaaataatgtt 11449  T

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Target: scaffold0287; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 11062 - 11029
Alignment:
Q  287 atctaggaaaaacacaattaacttcttgatataa 320  Q
    ||||||||||||||||||||||||||||||||||    
T  11062 atctaggaaaaacacaattaacttcttgatataa 11029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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