View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_52 (Length: 482)

Name: NF0846_high_52
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_52
NF0846_high_52
[»] chr7 (6 HSPs)
chr7 (32-450)||(23081344-23081779)
chr7 (346-450)||(23092534-23092638)
chr7 (371-449)||(23026714-23026792)
chr7 (371-449)||(23037111-23037189)
chr7 (371-437)||(23058079-23058145)
chr7 (363-447)||(23069409-23069493)
[»] chr6 (1 HSPs)
chr6 (128-291)||(2957823-2958000)
[»] chr5 (1 HSPs)
chr5 (124-226)||(32182930-32183032)
[»] chr8 (2 HSPs)
chr8 (130-171)||(28850929-28850970)
chr8 (154-219)||(45519894-45519959)
[»] chr2 (1 HSPs)
chr2 (121-170)||(27647072-27647121)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 32 - 450
Target Start/End: Complemental strand, 23081779 - 23081344
Alignment:
Q  32 cacaatcgttcatatgggttcgacgaaatttatataacacctacatagtttgatgaaactcataaaagcgtgttaaaatgcatgtgctatagggattggg 131  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23081779 cacaatcattcatatgggttcgacgaaatttatataacacctacatagtttgatgaaactcataaaagtgtgttaaaatgcatgtgctatagggattggg 23081680  T
Q  132 atttcctgctgtcacagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcagttta----- 226  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||  |||||         
T  23081679 atttcctgctgttacagcaggatgctgtaagagatcaggaccgttcattttagatcaacggttgagataaattaactgtgttaaactgttgtttaatcta 23081580  T
Q  227 ---------ttctcatatcaa---cggctaggatttattaccatgtgaaactgcggccatttctacagcaccaaatctcaatctgtgttatagagtgtat 314  Q
             ||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23081579 aaccgtccgttctcatatcaatggcggctaggatttattaccgcgtgaaactgcggccatttctacagcaccaaatcccaatctgtgttatagagtgtat 23081480  T
Q  315 ttctagcatgtcttaaataaatgtttaccgcagcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgc 414  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23081479 ttctagcattttttaaataaatgtttaccgcagcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgc 23081380  T
Q  415 ccattccaatgctaagttcttggcgcattgattcat 450  Q
    ||||||||||||||||||||||||||||||||||||    
T  23081379 ccattccaatgctaagttcttggcgcattgattcat 23081344  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 23092638 - 23092534
Alignment:
Q  346 agcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattga 445  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  23092638 agcattctccaaaagtaaggtcatcacaggtccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggtacattga 23092539  T
Q  446 ttcat 450  Q
    |||||    
T  23092538 ttcat 23092534  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 23026792 - 23026714
Alignment:
Q  371 acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgattca 449  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| | | |||||||||    
T  23026792 acaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattca 23026714  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 23037189 - 23037111
Alignment:
Q  371 acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgattca 449  Q
    |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||| | | |||||||||    
T  23037189 acaggtccaggtgccacagcatttgcacgaatattatcttttgcccattccaatgccaagttcttcgtgaattgattca 23037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 23058145 - 23058079
Alignment:
Q  371 acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttgg 437  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||    
T  23058145 acaggtccaggtgccacaacatttgctcgaatattatcctttgcccattccaatgctatgtttttgg 23058079  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 23069493 - 23069409
Alignment:
Q  363 tggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgatt 447  Q
    ||||||| || || |||||||| |||||||| |||||||||||||| ||| |  |||||||||||| |||||||| |||||||||    
T  23069493 tggtcattactgccccaggtgcaacaacatttgcacgaatattatcttttccatattccaatgctatgttcttggtgcattgatt 23069409  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 2958000 - 2957823
Alignment:
Q  128 tgggatttcctgctgtcacagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcagttta- 226  Q
    |||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||     
T  2958000 tgggatttcctgctgttacagcatgatgctgtaacagatcaggtccgttcattttagatcaacggttgagataatttaactgttttaaactgctgtttaa 2957901  T
Q  227 -------------ttctcatatcaacggctaggatttattaccatgtgaaactgcggccatttctacagcaccaaatc 291  Q
                 ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  2957900 tctgaaccgtccgttctcatatcaacggctaggatttattaccgcgtgaaactgcggcgatttctacagcaccaaatc 2957823  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 32182930 - 32183032
Alignment:
Q  124 ggattgggatttcctgctgtc-acagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcag 222  Q
    |||| |||||||||||||||  ||||| |||| |||||||| |||||| |||| |  ||||||| |||||||||||| |||||| ||||||||||||| |    
T  32182930 ggatagggatttcctgctgtttacagcaggat-ctgtaacaaatcagggccgtccgatttagatcaacggttgagattatttaactgtgttaaactgctg 32183028  T
Q  223 ttta 226  Q
    ||||    
T  32183029 ttta 32183032  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 28850929 - 28850970
Alignment:
Q  130 ggatttcctgctgtcacagctggatgctgtaacagatcagga 171  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  28850929 ggatttcctgctgttacagcaggatgctgtaacagatcagga 28850970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 45519959 - 45519894
Alignment:
Q  154 tgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactg 219  Q
    |||||||| |||| ||||||||||| ||||||||||||| | | || ||| |||||||||||||||    
T  45519959 tgctgtaatagatgaggaccgttcaatttagattaacggctaaaatcattcaattgtgttaaactg 45519894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 27647121 - 27647072
Alignment:
Q  121 tagggattgggatttcctgctgtcacagctggatgctgtaacagatcagg 170  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  27647121 tagggatttggatttcctgctgttatagcaggatgctgtaacagatcagg 27647072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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