View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_60 (Length: 441)
Name: NF0846_high_60
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_60 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 26220236 - 26220550
Alignment:
| Q |
25 |
agtggtggaatgcaattcactctctctagatcaatttcaaatagatcatcgtcatcctcttccattccaaaatcatgggaaactcctctttgttcctcag |
124 |
Q |
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| T |
26220236 |
agtggtggaatgcaattcactgcctctagatcaatttcaaatagatcatcatcatcctcttccattccaaaatcttgggaaactcctctttgttcctcag |
26220335 |
T |
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| Q |
125 |
aagtcatggtttgttttgttttgtggtataatatgtgaattaacgttgtcacatagaatgtaaatagatattataatgtacatgcacatgtagatttata |
224 |
Q |
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| T |
26220336 |
aagtcatggtttgttttgttttgtggtataatatgtgaattaacgttgtcacatagaatgtaaatagatattataatgtacatgcacatgtagatt--ta |
26220433 |
T |
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| Q |
225 |
tatagtgggaatttgatgttatggtgggtggtggcaagtagaacgctccccaacaaatgtgcatctgtcggtcaaagatgatatatagtgggaattttag |
324 |
Q |
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| T |
26220434 |
tatagtgggaatttgatgttatggtgggtggtggcaagtagaacgctccccaacaaatgtgcatcggtcggtcaaagaggatatatagtgggaattttag |
26220533 |
T |
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| Q |
325 |
agcagcagctcctccta |
341 |
Q |
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| T |
26220534 |
agcagcaactcctccta |
26220550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 3640214 - 3640320
Alignment:
| Q |
335 |
cctcctatgctactgggcgtaagccagccagaacagaggctagagcgcgtgcttcaagaccattatggacagaccgtcatgagccatgacgcccgtgatg |
434 |
Q |
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|||||| ||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||| |
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| T |
3640214 |
cctcctctgcaactgagcgtaagccagccagaacaaaggctagagcgcgtgcttgaagaccatgatggacagaccgtcatgagccgtgacgcccgtcatg |
3640313 |
T |
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| Q |
435 |
gtgccca |
441 |
Q |
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| T |
3640314 |
gtgccca |
3640320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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