View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_64 (Length: 421)

Name: NF0846_high_64
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_64
NF0846_high_64
[»] chr5 (8 HSPs)
chr5 (80-410)||(26797845-26798171)
chr5 (239-409)||(26825732-26825911)
chr5 (117-254)||(26802476-26802614)
chr5 (117-254)||(26810026-26810164)
chr5 (8-133)||(26824785-26824909)
chr5 (117-254)||(26825053-26825191)
chr5 (8-133)||(26802208-26802332)
chr5 (8-133)||(26809758-26809882)
[»] chr3 (15 HSPs)
chr3 (9-254)||(9997983-9998229)
chr3 (9-254)||(10107755-10108001)
chr3 (80-410)||(10218374-10218700)
chr3 (9-254)||(10232588-10232833)
chr3 (9-277)||(10376828-10377097)
chr3 (243-409)||(10108543-10108718)
chr3 (239-409)||(10229778-10229957)
chr3 (239-409)||(9998773-9998938)
chr3 (243-409)||(10233377-10233552)
chr3 (9-277)||(10364768-10365037)
chr3 (117-254)||(10229099-10229237)
chr3 (8-133)||(10228831-10228955)
chr3 (241-345)||(10439597-10439701)
chr3 (95-200)||(11767515-11767620)
chr3 (245-311)||(11767636-11767702)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 80 - 410
Target Start/End: Original strand, 26797845 - 26798171
Alignment:
Q  80 tttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 179  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26797845 tttgagtttatatcgatcaagtcattatctca------------aagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 26797932  T
Q  180 gaacaattttaaaatactagttgatccacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgctttta 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  26797933 gaacaattttaaaatactagtcgatccacagtcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgctttta 26798031  T
Q  280 aagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaagcattatttcattcacatg-------tgagtcttt--acatg 370  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       | | | | |  |||||    
T  26798032 aagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaagcattatttcattcacatgctcttaattactatatgcacatg 26798131  T
Q  371 ctaatatcctctcgagtcttaactccttaattgcattcat 410  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26798132 ctaatatcctctcgagtctttactccttaattgcattcat 26798171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 26825732 - 26825911
Alignment:
Q  239 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaag 338  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26825732 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 26825831  T
Q  339 cattatttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattca 409  Q
    ||||||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  26825832 cattatttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattca 26825911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 26802476 - 26802614
Alignment:
Q  117 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 215  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26802476 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26802575  T
Q  216 tatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26802576 tatatattgaaatgttccacaataaaatttatcattcaa 26802614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 26810026 - 26810164
Alignment:
Q  117 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 215  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26810026 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26810125  T
Q  216 tatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26810126 tatatattgaaatgttccacaataaaatttatcattcaa 26810164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 26824785 - 26824909
Alignment:
Q  8 tcagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26824785 tcagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaatttaattctctttttt-tttgagtttatatcgatcaagtcattat 26824883  T
Q  108 ctcagcagtaaagataaagagaatcg 133  Q
    |||||||||||||| |||||||||||    
T  26824884 ctcagcagtaaagacaaagagaatcg 26824909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 26825053 - 26825191
Alignment:
Q  117 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 215  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26825053 aaagacaaagagaatcgtaaacttttatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26825152  T
Q  216 tatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26825153 tatatattgaaatgttccacaataaaatttatcattcaa 26825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 26802208 - 26802332
Alignment:
Q  8 tcagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26802208 tcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaatttaattctctttttt-tttgagtttatatcgatcaagtcattat 26802306  T
Q  108 ctcagcagtaaagataaagagaatcg 133  Q
    |||||||||||||| |||||||||||    
T  26802307 ctcagcagtaaagacaaagagaatcg 26802332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 26809758 - 26809882
Alignment:
Q  8 tcagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26809758 tcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaatttaattctctttttt-tttgagtttatatcgatcaagtcattat 26809856  T
Q  108 ctcagcagtaaagataaagagaatcg 133  Q
    |||||||||||||| |||||||||||    
T  26809857 ctcagcagtaaagacaaagagaatcg 26809882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 9997983 - 9998229
Alignment:
Q  9 cagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattatc 108  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997983 cagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattatc 9998082  T
Q  109 tcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccac 208  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9998083 tcagcagtaaagacaaagagaatcgtaaacttttatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccac 9998182  T
Q  209 agtc-gactatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  9998183 agtcagactatatattgaaatgttccacaataaaatttatcattcaa 9998229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 10107755 - 10108001
Alignment:
Q  9 cagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattatc 108  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10107755 cagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattatc 10107854  T
Q  109 tcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccac 208  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10107855 tcagcagtaaagacaaagagaatcgtaaacttttatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccac 10107954  T
Q  209 agtc-gactatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  10107955 agtcagactatatattgaaatgttccacaataaaatttatcattcaa 10108001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 80 - 410
Target Start/End: Original strand, 10218374 - 10218700
Alignment:
Q  80 tttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 179  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218374 tttgagtttatatcgatcaagtcattatctca------------aagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 10218461  T
Q  180 gaacaattttaaaatactagttgatccacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgctttta 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  10218462 gaacaattttaaaatactagtcgatccacagtcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgctttta 10218560  T
Q  280 aagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaagcattatttcattcacatg-------tgagtcttt--acatg 370  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||       | | | | |  |||||    
T  10218561 aagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccaataacaagcattatttcattcacatgctcttaattactatatgcacatg 10218660  T
Q  371 ctaatatcctctcgagtcttaactccttaattgcattcat 410  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10218661 ctaatatcctctcgagtctttactccttaattgcattcat 10218700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 10232588 - 10232833
Alignment:
Q  9 cagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattatc 108  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10232588 cagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaatttaattct-ttttttgtttgagtttatatcgatcaagtcattatc 10232686  T
Q  109 tcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccac 208  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||||     
T  10232687 tcagcagtaaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagttttgaacaattttaaaatactagccgatccat 10232786  T
Q  209 ag-tcgactatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    || | ||||||||||  ||||||||||| ||||||||||||||||||    
T  10232787 agttagactatatattgaaatgttccacaataaaatttatcattcaa 10232833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 10377097 - 10376828
Alignment:
Q  9 cagcagttcagcttcattttgaatagccaaggggagaatgaatttaa-ggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||  ||||||||||||| |||||| | | ||||||||||| | |    
T  10377097 cagcagttcagcttcattttgaatagccaaggggaaaataaatttattggactaatttcgttctcttttttgtctgagttaacaccgatcaagtcactgt 10376998  T
Q  108 ctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatcca 207  Q
    || ||| |  | || |||||||||| ||| |||||||||||||||||||||||||||  |||||| |||||| ||||||||| |||||||||||||||||    
T  10376997 cttagcggcgaggacaaagagaatcataagcttctatttctaaaagccaataactatcatcattaaagtttcaaacaattttcaaatactagttgatcca 10376898  T
Q  208 cagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgcttt 277  Q
    || ||||||||||||  ||||| |||||  || |||||||||||||||||||||||||||||||| ||||    
T  10376897 caatcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattccttt 10376828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 10108543 - 10108718
Alignment:
Q  243 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaagcatt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10108543 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaagcatt 10108642  T
Q  343 atttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattca 409  Q
    ||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  10108643 atttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattca 10108718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 10229778 - 10229957
Alignment:
Q  239 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaag 338  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10229778 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 10229877  T
Q  339 cattatttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattca 409  Q
    ||||||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  10229878 cattatttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattca 10229957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 9998773 - 9998938
Alignment:
Q  239 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaag 338  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  9998773 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 9998872  T
Q  339 cattatttcattcacatgtgagtctttacatgctaatatcctctcgagtcttaactccttaattgcattca 409  Q
    ||||||||||||||||| |||||||||||      ||||||||||||||||||||||||||||||||||||    
T  9998873 cattatttcattcacatatgagtctttac-----tatatcctctcgagtcttaactccttaattgcattca 9998938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 10233377 - 10233552
Alignment:
Q  243 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaagcatt 342  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  10233377 tttatcattcaaacttcaaaaatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttttctgatgtgggtccattaacaagcatt 10233476  T
Q  343 atttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattca 409  Q
    ||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  10233477 atttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattca 10233552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 10365037 - 10364768
Alignment:
Q  9 cagcagttcagcttcattttgaatagccaaggggagaatgaatttaa-ggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    ||||| ||||||||||||||||| || ||||| || ||| ||||||| ||||||||||  ||||||||||||   ||||| | | ||||||||||| | |    
T  10365037 cagcacttcagcttcattttgaagagtcaaggagaaaataaatttaaaggactaatttcgttctcttttttggccgagttaacaccgatcaagtcactgt 10364938  T
Q  108 ctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatcca 207  Q
    || ||| || | || |||||||||||||| |||||||||||||| ||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||    
T  10364937 cttagcggtgaggacaaagagaatcgtaagcttctatttctaaacgccaataactatcatcattagagtttctaacaattttcaaatactagttgatcca 10364838  T
Q  208 cagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgcttt 277  Q
    || |||| |||||||  ||||| || ||  || |||||||||||||||||||||||||||||||||||||    
T  10364837 caatcgagtatatattgaaatggtctacagtagaatttatcattcaaacttcaaagatgccaattgcttt 10364768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 10229099 - 10229237
Alignment:
Q  117 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 215  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10229099 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 10229198  T
Q  216 tatatataaaaatgttccacgataaaatttatcattcaa 254  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  10229199 tatatattgaaatgttccacaataaaatttatcattcaa 10229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 10228831 - 10228955
Alignment:
Q  8 tcagcagttcagcttcattttgaatagccaaggggagaatgaatttaaggactaatttaattctcttttttgtttgagtttatatcgatcaagtcattat 107  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10228831 tcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaatttaattctctttttt-tttgagtttatatcgatcaagtcattat 10228929  T
Q  108 ctcagcagtaaagataaagagaatcg 133  Q
    |||||||||||||| |||||||||||    
T  10228930 ctcagcagtaaagacaaagagaatcg 10228955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 10439597 - 10439701
Alignment:
Q  241 aatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattattttgtctgatatgggtccattaacaagca 340  Q
    |||||||||||||||||| ||  |||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||| ||||||||    
T  10439597 aatttatcattcaaactttaataatgccaattgctttgaaagtgtgcaacttttctttggatatctattattttgtctgatgtgggtccataaacaagca 10439696  T
Q  341 ttatt 345  Q
    |||||    
T  10439697 ttatt 10439701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 11767515 - 11767620
Alignment:
Q  95 atcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaat 194  Q
    ||||||||| ||||| |||||| | ||||| || ||| |||| |||||| |||||||||||| || |||| |||||||||||||||||||||||| ||||    
T  11767515 atcaagtcactatcttagcagtgatgataaggaaaattgtaagcttctacttctaaaagccagtacctatcgtcattagagtttcgaacaatttttaaat 11767614  T
Q  195 actagt 200  Q
    ||||||    
T  11767615 actagt 11767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 11767636 - 11767702
Alignment:
Q  245 tatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattcgttgtatatctattat 311  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||| |||  ||||||||||||||    
T  11767636 tatcgttcaaacttcaaagatgccaattgcttttgaagtgtacaacttttctatgtatatctattat 11767702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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