View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_high_65 (Length: 414)

Name: NF0846_high_65
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_high_65
NF0846_high_65
[»] chr5 (9 HSPs)
chr5 (138-385)||(42897374-42897621)
chr5 (138-385)||(36982239-36982486)
chr5 (138-385)||(14044109-14044355)
chr5 (138-385)||(2970666-2970911)
chr5 (137-303)||(36767875-36768039)
chr5 (152-304)||(33404365-33404515)
chr5 (137-242)||(5712612-5712717)
chr5 (331-386)||(33403246-33403301)
chr5 (22-96)||(32161798-32161871)
[»] chr3 (18 HSPs)
chr3 (138-385)||(51545715-51545962)
chr3 (137-385)||(40496826-40497074)
chr3 (137-385)||(41346100-41346348)
chr3 (138-385)||(48169777-48170024)
chr3 (138-385)||(54014290-54014537)
chr3 (137-385)||(50676528-50676774)
chr3 (166-385)||(24709063-24709282)
chr3 (175-385)||(48737579-48737789)
chr3 (138-303)||(13542792-13542957)
chr3 (299-385)||(12568169-12568255)
chr3 (299-385)||(13544633-13544719)
chr3 (154-307)||(30462801-30462952)
chr3 (331-386)||(30459858-30459913)
chr3 (139-213)||(22756153-22756227)
chr3 (138-171)||(12568275-12568308)
chr3 (138-171)||(13544739-13544772)
chr3 (138-171)||(48169724-48169757)
chr3 (173-217)||(1334733-1334777)
[»] chr2 (21 HSPs)
chr2 (138-385)||(2110273-2110520)
chr2 (138-385)||(43370727-43370974)
chr2 (138-385)||(29194041-29194288)
chr2 (138-385)||(28585683-28585930)
chr2 (137-385)||(45080419-45080665)
chr2 (155-385)||(4828106-4828336)
chr2 (137-384)||(8381315-8381562)
chr2 (139-375)||(1779073-1779309)
chr2 (169-385)||(42846942-42847154)
chr2 (169-326)||(9370486-9370643)
chr2 (186-355)||(43377256-43377423)
chr2 (161-385)||(39646327-39646573)
chr2 (138-307)||(31921621-31921788)
chr2 (138-242)||(30422588-30422692)
chr2 (174-299)||(16970295-16970418)
chr2 (138-242)||(25898777-25898880)
chr2 (317-385)||(16964869-16964937)
chr2 (166-223)||(27922606-27922663)
chr2 (331-386)||(31922032-31922087)
chr2 (173-218)||(9724988-9725033)
chr2 (174-211)||(18460605-18460642)
[»] chr4 (25 HSPs)
chr4 (138-385)||(37064753-37065000)
chr4 (138-385)||(39788046-39788293)
chr4 (138-385)||(40071449-40071696)
chr4 (138-385)||(925136-925383)
chr4 (138-385)||(54438157-54438404)
chr4 (138-385)||(17493806-17494053)
chr4 (137-385)||(20789726-20789973)
chr4 (138-385)||(47199539-47199786)
chr4 (141-385)||(33800786-33801029)
chr4 (138-385)||(34408657-34408904)
chr4 (169-385)||(32217968-32218184)
chr4 (138-385)||(21240379-21240626)
chr4 (175-378)||(52101108-52101311)
chr4 (169-377)||(28910189-28910395)
chr4 (186-385)||(53509690-53509889)
chr4 (169-385)||(3172051-3172266)
chr4 (175-385)||(46870660-46870868)
chr4 (138-278)||(51744519-51744659)
chr4 (174-385)||(41555515-41555719)
chr4 (311-385)||(51744657-51744731)
chr4 (138-242)||(10441529-10441631)
chr4 (139-307)||(28689666-28689829)
chr4 (169-209)||(35029154-35029194)
chr4 (331-386)||(10441196-10441251)
chr4 (173-217)||(48400583-48400627)
[»] scaffold0519 (1 HSPs)
scaffold0519 (138-385)||(10593-10840)
[»] chr8 (13 HSPs)
chr8 (138-385)||(11254553-11254800)
chr8 (138-385)||(17493579-17493826)
chr8 (138-385)||(18575081-18575328)
chr8 (138-385)||(27820826-27821073)
chr8 (138-385)||(39906963-39907208)
chr8 (141-385)||(38069898-38070142)
chr8 (138-385)||(12738366-12738613)
chr8 (161-385)||(17335994-17336217)
chr8 (138-385)||(9753823-9754069)
chr8 (166-385)||(13243575-13243793)
chr8 (138-307)||(11147782-11147949)
chr8 (174-218)||(5878178-5878222)
chr8 (174-217)||(29638412-29638455)
[»] chr7 (18 HSPs)
chr7 (138-385)||(4041000-4041247)
chr7 (138-385)||(6392324-6392571)
chr7 (138-385)||(40232115-40232362)
chr7 (155-385)||(29737458-29737688)
chr7 (138-385)||(25943649-25943892)
chr7 (138-385)||(41427648-41427895)
chr7 (138-385)||(27596086-27596332)
chr7 (146-385)||(31689361-31689600)
chr7 (155-385)||(24300171-24300391)
chr7 (184-385)||(38276591-38276792)
chr7 (174-385)||(21442836-21443045)
chr7 (207-385)||(48838113-48838289)
chr7 (147-307)||(22619883-22620041)
chr7 (138-307)||(22338101-22338268)
chr7 (138-205)||(7380535-7380602)
chr7 (331-386)||(22337763-22337818)
chr7 (138-171)||(4040947-4040980)
chr7 (176-216)||(36070217-36070257)
[»] chr1 (22 HSPs)
chr1 (138-385)||(1929217-1929463)
chr1 (138-385)||(32045886-32046133)
chr1 (138-385)||(46862609-46862856)
chr1 (138-385)||(50777050-50777297)
chr1 (138-385)||(28036700-28036948)
chr1 (141-385)||(39150900-39151144)
chr1 (174-385)||(38321698-38321909)
chr1 (142-385)||(46370980-46371217)
chr1 (140-385)||(8229116-8229362)
chr1 (138-385)||(1207452-1207697)
chr1 (138-385)||(40562436-40562681)
chr1 (138-377)||(9129401-9129641)
chr1 (225-385)||(38817827-38817984)
chr1 (169-217)||(9590625-9590673)
chr1 (169-217)||(36326154-36326202)
chr1 (155-217)||(14222837-14222899)
chr1 (169-211)||(21304756-21304798)
chr1 (176-218)||(52382302-52382344)
chr1 (176-209)||(14352688-14352721)
chr1 (176-213)||(20986544-20986581)
chr1 (172-217)||(50334035-50334080)
chr1 (169-217)||(31634244-31634292)
[»] chr6 (15 HSPs)
chr6 (137-385)||(28541586-28541834)
chr6 (138-385)||(16435832-16436075)
chr6 (137-385)||(12350325-12350573)
chr6 (153-385)||(29182644-29182876)
chr6 (137-385)||(1241162-1241409)
chr6 (138-385)||(30736472-30736719)
chr6 (175-385)||(7271115-7271325)
chr6 (140-385)||(13042025-13042268)
chr6 (138-385)||(31013495-31013742)
chr6 (161-385)||(13210397-13210618)
chr6 (190-385)||(1870587-1870780)
chr6 (169-303)||(31833622-31833751)
chr6 (320-384)||(31833747-31833811)
chr6 (137-171)||(28541854-28541888)
chr6 (105-141)||(3674134-3674170)
[»] scaffold0061 (1 HSPs)
scaffold0061 (138-385)||(10017-10264)
[»] scaffold0047 (2 HSPs)
scaffold0047 (138-385)||(69806-70053)
scaffold0047 (138-171)||(69753-69786)
[»] scaffold0532 (1 HSPs)
scaffold0532 (138-385)||(3867-4114)
[»] scaffold0318 (1 HSPs)
scaffold0318 (141-385)||(16410-16641)
[»] scaffold0016 (1 HSPs)
scaffold0016 (138-315)||(92169-92346)
[»] scaffold1194 (1 HSPs)
scaffold1194 (138-385)||(1032-1267)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 42897374 - 42897621
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  42897374 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 42897473  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42897474 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 42897573  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42897574 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 42897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 36982486 - 36982239
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||    
T  36982486 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 36982387  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36982386 cccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 36982287  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  36982286 gggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtatt 36982239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 14044355 - 14044109
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||| ||| | |||    
T  14044355 tactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttg 14044257  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14044256 cccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 14044157  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14044156 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatatt 14044109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 2970666 - 2970911
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||| ||| || ||||  |||| || |||| ||||||||| |||||||||||| |||||| |||||||||||| | ||||| ||| |||||||||    
T  2970666 tactccctctgtccctcaatatttgacctacttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattg 2970765  T
Q  238 cccttgcca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||  | |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||     
T  2970766 cccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgttccactacaaacttta-cattgagaccacaaaaagtatttatac 2970862  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||| ||||||||| ||||||||||| |||||| ||||||||||    
T  2970863 ggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtatt 2970911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 36767875 - 36768039
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    ||||||| ||| || ||||||||||||| ||||||| || |||||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||    
T  36767875 gtactccgtccctccctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaagagagtgatatttttactgaatt 36767974  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 303  Q
    ||||||   |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  36767975 gcccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 36768039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 152 - 304
Target Start/End: Complemental strand, 33404515 - 33404365
Alignment:
Q  152 ctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattatt 251  Q
    ||||||||||||| || |||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||   ||||||    
T  33404515 ctgaataagtgacctacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 33404416  T
Q  252 ttgaaactttttcacttttaagtaatgattactttctttgttccactacaaac 304  Q
    || |||| |||  |||||||| |||| ||||||||  ||||||||||||||||    
T  33404415 tttaaaccttt--acttttaaataataattactttaattgttccactacaaac 33404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 5712717 - 5712612
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| |||||||| |||| || |||| |||| |||| |||||||||||| |||||| |||||||||||| ||||||| |||| |||||||    
T  5712717 gtactccctccgtccctgaataaatgacctacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaatt 5712618  T
Q  237 gccctt 242  Q
    ||||||    
T  5712617 gccctt 5712612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 33403301 - 33403246
Alignment:
Q  331 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 386  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  33403301 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 33403246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 32161798 - 32161871
Alignment:
Q  22 cacagaagctggtaaacccaagtatttcaaatgacacaacacaatcttaatttagcttccaatcttggaacatga 96  Q
    |||| ||||||||||||||||||||||| ||||||||  ||| | |||||||| || |||||  |||||||||||    
T  32161798 cacaaaagctggtaaacccaagtatttcgaatgacactccacgaccttaattt-gcatccaactttggaacatga 32161871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 51545962 - 51545715
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  51545962 tactctctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 51545863  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51545862 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 51545763  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51545762 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 51545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 40497074 - 40496826
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  40497074 gtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagtt 40496975  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40496974 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 40496875  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40496874 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 40496826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 41346348 - 41346100
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||| ||    
T  41346348 gtactccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagtt 41346249  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41346248 gcccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 41346149  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41346148 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 41346100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 48170024 - 48169777
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||  ||    
T  48170024 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctg 48169925  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48169924 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 48169825  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  48169824 ggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 48169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 54014537 - 54014290
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||| ||| || ||||||| || ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||    
T  54014537 tactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 54014438  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54014437 cccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54014338  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014337 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 54014290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 50676774 - 50676528
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| ||    
T  50676774 gtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagtt 50676675  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50676674 gcc-ttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggg-accacaaaaagtatttataa 50676577  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50676576 ggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 50676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 166 - 385
Target Start/End: Complemental strand, 24709282 - 24709063
Alignment:
Q  166 tatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttca 265  Q
    ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  24709282 tatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttca 24709183  T
Q  266 cttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaa 365  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| ||    
T  24709182 cttttaagtaatgattactttctttgtttcactacaaactttaacatgaggaccacaaaaagtatttataaaggataaatctgtcaaattttgcttataa 24709083  T
Q  366 atctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||    
T  24709082 atctgagaaggtcaagtatt 24709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 175 - 385
Target Start/End: Complemental strand, 48737789 - 48737579
Alignment:
Q  175 atttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagt 274  Q
    |||||||| ||||||||||||||||| | |||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48737789 atttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcccttgtcattattttgaaactttttcacttttaagt 48737690  T
Q  275 aatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaa 374  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||| |||||||| ||    
T  48737689 aatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatttgtcaaattctgcttaaaaatctgaaaa 48737590  T
Q  375 ggtcaagtatt 385  Q
    | |||||||||    
T  48737589 gatcaagtatt 48737579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 13542792 - 13542957
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||| |||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||    
T  13542792 tactccatccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttg 13542891  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 303  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13542892 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 299 - 385
Target Start/End: Original strand, 12568169 - 12568255
Alignment:
Q  299 acaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12568169 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 12568255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 299 - 385
Target Start/End: Original strand, 13544633 - 13544719
Alignment:
Q  299 acaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13544633 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 13544719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 30462952 - 30462801
Alignment:
Q  154 gaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattatttt 253  Q
    ||||||||||  || |||| ||||||||| |||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||   ||||||||    
T  30462952 gaataagtgatctacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattgcccttattattatttt 30462853  T
Q  254 gaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
     ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  30462852 taaac--cttcacttttaaataataattactttaattgttccactacaaacttt 30462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 30459913 - 30459858
Alignment:
Q  331 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 386  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  30459913 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 30459858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 22756153 - 22756227
Alignment:
Q  139 actccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaa 213  Q
    ||||||||||| ||  |||||||||   |||||||||||||||| | |||||| ||| |||| ||||||||||||    
T  22756153 actccctccgtttcaaaataagtgagtcatttgatcatttcacacatattaaggaaattgtataaatgaaagaaa 22756227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 12568308 - 12568275
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttg 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  12568308 tactccctccgtccctgaataagtgacatatttg 12568275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 13544772 - 13544739
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttg 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  13544772 tactccctccgtccctgaataagtgacatatttg 13544739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 48169724 - 48169757
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttg 171  Q
    ||||||||||||||||||||||||||| ||||||    
T  48169724 tactccctccgtctctgaataagtgacctatttg 48169757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 1334733 - 1334777
Alignment:
Q  173 tcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    |||||||||| ||||||||||||| ||| |||||||||| |||||    
T  1334733 tcatttcacacagattaagaaaagcgtataaatgaaagagagaga 1334777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 2110520 - 2110273
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  2110520 tactccttccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 2110421  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2110420 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 2110321  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  2110320 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 2110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 43370974 - 43370727
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  43370974 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttg 43370875  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43370874 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 43370775  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  43370774 gggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 43370727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 29194288 - 29194041
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  29194288 tactccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 29194189  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  29194188 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatcgggaccacaaaaagtatttataag 29194089  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29194088 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 29194041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 28585683 - 28585930
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||| |||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||    
T  28585683 tactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 28585782  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  28585783 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 28585882  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  28585883 gggtaaatctgtcaaattttgcttagaaatctgagaaggttaagtatt 28585930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 137 - 385
Target Start/End: Original strand, 45080419 - 45080665
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||| ||    
T  45080419 gtactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagag--tgatacttttactgagtt 45080516  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45080517 gcccttatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 45080616  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45080617 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 45080665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 155 - 385
Target Start/End: Original strand, 4828106 - 4828336
Alignment:
Q  155 aataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttg 254  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  4828106 aataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgcccttgtcattattttg 4828205  T
Q  255 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  4828206 aaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaat 4828305  T
Q  355 tttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||| |||||||||||| ||||    
T  4828306 tttgcttagaaatttgagaaggtcaaatatt 4828336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 137 - 384
Target Start/End: Original strand, 8381315 - 8381562
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| ||||||||||||  ||||||| ||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||| ||    
T  8381315 gtactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagtt 8381414  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  8381415 gcccttgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaattttaacatgaagaccacaaaaagtatttataa 8381514  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtat 384  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||    
T  8381515 ggggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtat 8381562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 139 - 375
Target Start/End: Original strand, 1779073 - 1779309
Alignment:
Q  139 actccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgc 238  Q
    ||||| |||||| || ||||  |||| || |||| ||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||     
T  1779073 actccttccgtccctcaatacttgacttacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgt 1779172  T
Q  239 ccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagg 338  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |    
T  1779173 ctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattccactacaaactttaacatggggaccacaaaaagtatttataaag 1779272  T
Q  339 ggtaaatctgtcaaattttgcttagaaatctgagaag 375  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  1779273 ggtaaatctgttaaattctgcttagaaatctgagaag 1779309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 385
Target Start/End: Original strand, 42846942 - 42847154
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcactt 268  Q
    |||| ||||||||| |||||| |||| ||| ||||||||||||  |||| ||||| ||||||| ||||| |||||  ||||||||||||  | |||||||    
T  42846942 ttgaccatttcacacagattatgaaaggtgcaaaaatgaaaga--gagaatgatatttttactaaattgtccttgttattattttgaaa--tcttcactt 42847037  T
Q  269 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatc 368  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||  | ||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  42847038 ttaagtaatgattattttctttgttccattacaaacttttacatggagaacacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatc 42847137  T
Q  369 tgagaaggtcaagtatt 385  Q
    ||| |||||||||||||    
T  42847138 tgaaaaggtcaagtatt 42847154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 169 - 326
Target Start/End: Complemental strand, 9370643 - 9370486
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcactt 268  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||| | ||||  ||||||||||||| ||||| ||||||||||||||||||||||||    
T  9370643 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcactt 9370544  T
Q  269 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaa 326  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||    
T  9370543 ttaagtaatgattactttctttgtttcactacaaactttaatatggggatcacaaaaa 9370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 355
Target Start/End: Original strand, 43377256 - 43377423
Alignment:
Q  186 attaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattactt 285  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||  ||||  ||||||||||||| ||  ||||||||||||||||||||||    
T  43377256 attaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaacctt--cacttttaagtaatgattactt 43377353  T
Q  286 tctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaatt 355  Q
    |||||||||||||||||||||| || |||  || |||||||||||||||||| | ||||| |||||||||    
T  43377354 tctttgttccactacaaacttttacttggagactacaaaaagtatttataagagataaatttgtcaaatt 43377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 161 - 385
Target Start/End: Original strand, 39646327 - 39646573
Alignment:
Q  161 tgacatatttgatcatttcacatagattaagaaaag--tgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaac 258  Q
    |||||||||||| ||||||| | ||||||||||||   ||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||    
T  39646327 tgacatatttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaac 39646426  T
Q  259 ttt---------------------ttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
     ||                     ||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  39646427 cttcacttttattattttgaaaccttcacttttaagtaatgattacttt-tttgttccactacaaacttttacatgaggaccacaaaaagtatttataag 39646525  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||| ||||||||| |  ||||||||||||||| ||||| ||||    
T  39646526 gggtaaatttgtcaaattctatttagaaatctgagaatgtcaaatatt 39646573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 31921621 - 31921788
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||  ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  31921621 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaaattg 31921720  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
    |||||   |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||| ||||    
T  31921721 cccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaagcttt 31921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 30422692 - 30422588
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||    
T  30422692 tactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagttg 30422593  T
Q  238 ccctt 242  Q
    |||||    
T  30422592 ccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 16970418 - 16970295
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaag 273  Q
    ||||||||| | ||||||||||||||||| || ||||||||| | ||||| ||||||||||||||||||   |||||||| ||||   ||||||||||||    
T  16970418 catttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaac--cttcacttttaag 16970321  T
Q  274 taatgattactttctttgttccacta 299  Q
    |||||||||||||||||||| |||||    
T  16970320 taatgattactttctttgtttcacta 16970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 25898880 - 25898777
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||  ||||||||||||| || |||| ||||||||| |||||||||| |||||||| |||||||||| | ||||||| |||||||||||||    
T  25898880 tactccctccgttcctgaataagtgac-tacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactgaattg 25898782  T
Q  238 ccctt 242  Q
    |||||    
T  25898781 ccctt 25898777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 16964937 - 16964869
Alignment:
Q  317 accacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||| |||| |||||||||||||||||    
T  16964937 accacaaaaagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtatt 16964869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 27922606 - 27922663
Alignment:
Q  166 tatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgata 223  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||    
T  27922606 tatttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagagaatgata 27922663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 31922032 - 31922087
Alignment:
Q  331 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 386  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  31922032 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 31922087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 9725033 - 9724988
Alignment:
Q  173 tcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagag 218  Q
    |||||||||| | ||||||||||||||| |||||||||| ||||||    
T  9725033 tcatttcacacatattaagaaaagtgtataaatgaaagagagagag 9724988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 18460642 - 18460605
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaaga 211  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  18460642 catttcacacagattaagaaaagtgtataaatgaaaga 18460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 37064753 - 37065000
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  37064753 tactccatccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 37064852  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  37064853 cccttgtcatttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataag 37064952  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  37064953 gggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtatt 37065000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 39788293 - 39788046
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  39788293 tactcccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39788194  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39788193 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 39788094  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  39788093 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 39788046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 40071449 - 40071696
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  40071449 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40071548  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40071549 cccttgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40071648  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40071649 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 40071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 925136 - 925383
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| | ||||||||||||||||| |||    
T  925136 tactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttg 925235  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  925236 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 925335  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  925336 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 54438157 - 54438404
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  54438157 tactccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 54438256  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54438257 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54438356  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  54438357 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 54438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 17494053 - 17493806
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||    
T  17494053 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttg 17493954  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  17493953 cccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaactttaacatggggaccacaaaaagtttttataag 17493854  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  17493853 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 17493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 20789973 - 20789726
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||  ||||||||||||  ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  |    
T  20789973 gtactccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagct 20789874  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20789873 gcc-ttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 20789775  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  20789774 gggataaatctgtcaaattttacttagaaatctgagaagatcaagtatt 20789726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 47199786 - 47199539
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||  ||||||||||||  ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||    
T  47199786 tactccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttg 47199687  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  47199686 cccttgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 47199587  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  47199586 gggtaaatctgttaaattttgcctagaaatctgagaaggtcaagtatt 47199539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 141 - 385
Target Start/End: Original strand, 33800786 - 33801029
Alignment:
Q  141 tccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgccc 240  Q
    |||||||||| ||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  33800786 tccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccc 33800885  T
Q  241 ttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagggg 340  Q
    ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||    
T  33800886 ttgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaactttaatatggggaccac-aaaagtatttataagagg 33800984  T
Q  341 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  33800985 taaatctgtcaaattttacttagaaatctgagaaggtcaagtatt 33801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 34408657 - 34408904
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||  ||||||||| | |||| |||||||||||| |||||||||||||| ||||||||||| ||| |||    
T  34408657 tactccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttg 34408756  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| | |||||||||||||||||||||    
T  34408757 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaactttaacatgtggaccacaaaaagtatttataag 34408856  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||    
T  34408857 gggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtatt 34408904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 169 - 385
Target Start/End: Original strand, 32217968 - 32218184
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcactt 268  Q
    |||| ||||||||| |||||||||| |||||||| |||||||||||||| | ||| ||||||||||| | ||||| ||||||||||||||||||||||||    
T  32217968 ttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcactt 32218067  T
Q  269 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  32218068 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttaaaaatc 32218167  T
Q  369 tgagaaggtcaagtatt 385  Q
    ||||||  |||||||||    
T  32218168 tgagaaaatcaagtatt 32218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 21240626 - 21240379
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||  |||  |||| || |||| ||||||||| ||||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  21240626 tactccctccgtccctcgatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattg 21240527  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
     | ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  21240526 acattgtcactattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 21240427  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||    
T  21240426 gggtaaatctgtcaaattctacttagaagtctgagaaggtcaagtatt 21240379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 175 - 378
Target Start/End: Complemental strand, 52101311 - 52101108
Alignment:
Q  175 atttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagt 274  Q
    |||||||| ||||||||||||||||||| |||||||||| | | ||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  52101311 atttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcacttttaagt 52101212  T
Q  275 aatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaa 374  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  52101211 aatggttattttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttataaatctgagaa 52101112  T
Q  375 ggtc 378  Q
    ||||    
T  52101111 ggtc 52101108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 169 - 377
Target Start/End: Original strand, 28910189 - 28910395
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcactt 268  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||| ||||| ||||||||||||| |||||  ||||||||||||| ||  |||||    
T  28910189 ttgattatttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaacctt--cactt 28910286  T
Q  269 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatc 368  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  28910287 ttaagtaatgattactttctttgttccactagaaacttttacatggaaaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatc 28910386  T
Q  369 tgagaaggt 377  Q
    |||||||||    
T  28910387 tgagaaggt 28910395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 186 - 385
Target Start/End: Original strand, 53509690 - 53509889
Alignment:
Q  186 attaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattactt 285  Q
    |||| |||||||||||| |||||||||| ||| ||||| | ||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||| ||    
T  53509690 attatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcacttttaaataatgattattt 53509789  T
Q  286 tctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||| ||||    
T  53509790 tctttgttccactacaaattttaacatggggatcacaaaaagtatttataaggaataaatatgtcaaattctccttagaaatctgataaggtcaaatatt 53509889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 169 - 385
Target Start/End: Original strand, 3172051 - 3172266
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgcca-ttattttgaaactttttcact 267  Q
    |||| ||||||||| |||||||||||| |||||| |||||| ||||| | ||||| ||||||||||||| |||||  | |||||||||||| ||  ||||    
T  3172051 ttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--cact 3172148  T
Q  268 tttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaat 367  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  3172149 tttaagtaatgattactttctttgttccactacaaacttttacattgagaccacaaaaagtatttataaaaggtaaatttgtcaaattctgcttagaaat 3172248  T
Q  368 ctgagaaggtcaagtatt 385  Q
     |||||| ||||||||||    
T  3172249 ttgagaaagtcaagtatt 3172266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 175 - 385
Target Start/End: Complemental strand, 46870868 - 46870660
Alignment:
Q  175 atttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagt 274  Q
    |||||||| | | ||| ||||||| ||  |||||||||||||| ||||| ||||||||||| | |||||  ||||||||||||| ||  |||||||||||    
T  46870868 atttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaacctt--cacttttaagt 46870771  T
Q  275 aatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaa 374  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||| |    
T  46870770 aatgatgactttctttgttccactacaaacttttacatggggaccacaaaaagtatttataagggataaatttgtcaaattgtacttaaaaatctgagca 46870671  T
Q  375 ggtcaagtatt 385  Q
    |||||||||||    
T  46870670 ggtcaagtatt 46870660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 51744519 - 51744659
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| | |||    
T  51744519 tactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttactaagttg 51744618  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatg 278  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  51744619 cccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 385
Target Start/End: Complemental strand, 41555719 - 41555515
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaag 273  Q
    ||||||||| ||||||||||||||||||| ||||||||    || ||||| ||||||||||||| | ||   |||||||| |||| ||  |  |||||||    
T  41555719 catttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtcatt---attatttttaaaccttcacttttttaag 41555627  T
Q  274 taatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgaga 373  Q
    |||||||||||||||||||| ||||||||||||| |||| |  |||||||||||||  |||||||||||||  |||||||||  ||||| |||| |||||    
T  41555626 taatgattactttctttgtttcactacaaacttttacatagagaccacaaaaagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgaga 41555527  T
Q  374 aggtcaagtatt 385  Q
    ||||||| ||||    
T  41555526 aggtcaattatt 41555515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 51744657 - 51744731
Alignment:
Q  311 atgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51744657 atggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 51744731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 10441631 - 10441529
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| || |||| ||||||||| ||||||||| ||||||||| || ||||||  ||||||||| |||||||||||||    
T  10441631 tactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaattg 10441534  T
Q  238 ccctt 242  Q
    |||||    
T  10441533 ccctt 10441529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 28689666 - 28689829
Alignment:
Q  139 actccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgc 238  Q
    |||||||| ||| ||||||||||||  |||||||  |||||||| |||||||||||| |||||| |||||  ||| | |  |||| ||||||||||||||    
T  28689666 actccctctgtccctgaataagtgatctatttgactatttcacacagattaagaaaaatgtaaagatgaagaaaaaaaa--gatatttttactgaattgc 28689763  T
Q  239 ccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
    ||||   |||||||| ||||   |||| |||||| |||| ||||||||  |||||||||||||||||||    
T  28689764 ccttattattatttttaaac--cttca-ttttaaataataattactttaattgttccactacaaacttt 28689829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 35029194 - 35029154
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaa 209  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  35029194 ttgaccatttcacatagattaagaaaagtgtataaatgaaa 35029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 10441251 - 10441196
Alignment:
Q  331 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 386  Q
    ||||||| ||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  10441251 ttataagaggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 10441196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 48400583 - 48400627
Alignment:
Q  173 tcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    |||||||||| |||||||||||| |||| |||||||||| |||||    
T  48400583 tcatttcacacagattaagaaaaatgtataaatgaaagagagaga 48400627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 10593 - 10840
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  10593 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 10692  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  10693 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 10792  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  10793 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 11254800 - 11254553
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  11254800 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 11254701  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  11254700 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 11254601  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  11254600 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 11254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 17493826 - 17493579
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  17493826 tactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 17493727  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17493726 cccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 17493627  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17493626 gggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtatt 17493579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 18575328 - 18575081
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  18575328 tactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 18575229  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18575228 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 18575129  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
     | ||||| |||||||||||||||||||||||||||||||| ||||||    
T  18575128 agataaatttgtcaaattttgcttagaaatctgagaaggtcgagtatt 18575081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 27821073 - 27820826
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||| ||||  | |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||    
T  27821073 tactcccttcgtcctttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 27820974  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  27820973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaattttaacatggggaccacaaaaagtatttataag 27820874  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27820873 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 27820826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 39907208 - 39906963
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  39907208 tactccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39907109  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  39907108 cccttatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgg--accacaaaaagtatttataag 39907011  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39907010 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 39906963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 141 - 385
Target Start/End: Original strand, 38069898 - 38070142
Alignment:
Q  141 tccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgccc 240  Q
    ||||||||||  |||| ||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  38069898 tccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccc 38069997  T
Q  241 ttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagggg 340  Q
    ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  38069998 ttgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataatggg 38070097  T
Q  341 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  38070098 taaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 38070142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 12738366 - 12738613
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||| ||||||| || ||||  |||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||| | ||||| |||||||||||||    
T  12738366 tactctctccgtccctcaatacttgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattg 12738465  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  12738466 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaaatatttataag 12738565  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  12738566 gggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtatt 12738613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 161 - 385
Target Start/End: Original strand, 17335994 - 17336217
Alignment:
Q  161 tgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactt 260  Q
    |||| |||||||  |||||||||| |||||||||| |||||| |||||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||    
T  17335994 tgacctatttgacaatttcacataaattaagaaaa-tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactt 17336092  T
Q  261 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgct 360  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17336093 tttcacttttaagtaatgattactttcgttgttccactagaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgct 17336192  T
Q  361 tagaaatctgagaaggtcaagtatt 385  Q
    ||||||||| |||||||||||||||    
T  17336193 tagaaatctaagaaggtcaagtatt 17336217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 9754069 - 9753823
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || ||||  |||| || |||| ||||||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||||||||    
T  9754069 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattg 9753970  T
Q  238 cccttgcca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
     |||||  | |||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||| |||| |  |||||||||| |||||||||    
T  9753969 tccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgtttcactacaaacttttacattgagaccacaaaaaatatttataa 9753872  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    | ||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  9753871 gaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtatt 9753823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 166 - 385
Target Start/End: Original strand, 13243575 - 13243793
Alignment:
Q  166 tatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgcca-ttattttgaaactttttc 264  Q
    ||||||| |||||||||  |||||||||||||||||| || ||||||||| | ||||| ||||||||||||| |||||  | |||||||||||| ||  |    
T  13243575 tatttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--c 13243672  T
Q  265 acttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttaga 364  Q
    | |||||||||||||||| |||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  13243673 atttttaagtaatgattattttctttgttccactacaaacttttacattgagaccacaaaaagtatttataaggggtgaatttgtcaaattctgcttaga 13243772  T
Q  365 aatctgagaaggtcaagtatt 385  Q
    ||| |||||||||||| ||||    
T  13243773 aatttgagaaggtcaaatatt 13243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 11147949 - 11147782
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||    
T  11147949 tactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattg 11147850  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
    |||||   |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  11147849 cccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 11147782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 5878178 - 5878222
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagagag 218  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  5878178 catttcacatagattaagaaaagtgtataaatgaaagagagagag 5878222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 29638455 - 29638412
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  29638455 catttcacacagattaagaaaagtgtataaatgaaagaaagaga 29638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 4041247 - 4041000
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||    
T  4041247 tactccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttg 4041148  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4041147 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaacaagtatttataag 4041048  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4041047 gggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtatt 4041000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 6392571 - 6392324
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||||||||  |||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  6392571 tactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 6392472  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6392471 cccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 6392372  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6392371 gggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtatt 6392324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 40232115 - 40232362
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||  ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||    
T  40232115 tactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 40232214  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40232215 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40232314  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  40232315 gggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 40232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 155 - 385
Target Start/End: Complemental strand, 29737688 - 29737458
Alignment:
Q  155 aataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttg 254  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  29737688 aataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttg 29737589  T
Q  255 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29737588 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 29737489  T
Q  355 tttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||| |||||||||||||||    
T  29737488 tttgcttagaaatctaagaaggtcaagtatt 29737458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 25943649 - 25943892
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  25943649 tactccctccgtccctgaataagtgacctatttgatcatttcaca--gattaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattg 25943746  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||    
T  25943747 ccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggac--cataaagtatttataag 25943844  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25943845 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 25943892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 41427648 - 41427895
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||||||||||| ||||| ||   ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41427648 tactccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattg 41427747  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  41427748 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataag 41427847  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  41427848 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 41427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 27596086 - 27596332
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||  |||    
T  27596086 tactccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 27596185  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  27596186 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaactttaacatggg-accacaaaaagtatttataaa 27596284  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596285 gggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 27596332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 146 - 385
Target Start/End: Original strand, 31689361 - 31689600
Alignment:
Q  146 ccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgcc 245  Q
    ||||| || |||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |    
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  246 attattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaat 345  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||| ||||||||||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaactttaacatgaggaccacaaaaagtatatataaggggtaaat 31689560  T
Q  346 ctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31689561 ctgtcaaattttgcttagaaatctgagaaggtcaagtatt 31689600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 155 - 385
Target Start/End: Original strand, 24300171 - 24300391
Alignment:
Q  155 aataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttg 254  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||               
T  24300171 aataagtgacatatttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgt---------- 24300260  T
Q  255 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaat 354  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24300261 aaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 24300360  T
Q  355 tttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||| ||| |||||||||||||    
T  24300361 tttgcttagaaatttgataaggtcaagtatt 24300391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 184 - 385
Target Start/End: Original strand, 38276591 - 38276792
Alignment:
Q  184 agattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattac 283  Q
    ||||||||||||| ||||| |||||||||||||| ||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38276591 agattaagaaaagagtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattac 38276690  T
Q  284 tttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagta 383  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  38276691 tttctttgttccactacaaactttaatatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagta 38276790  T
Q  384 tt 385  Q
    ||    
T  38276791 tt 38276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 174 - 385
Target Start/End: Original strand, 21442836 - 21443045
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaag 273  Q
    ||||||| | ||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||||||||  ||||||||||||||||  ||||||||||    
T  21442836 catttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaacttt--cacttttaag 21442933  T
Q  274 taatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgaga 373  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||  ||||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||||    
T  21442934 taatggttactttctttattccactgcaaacttttacatggagaccacaaaaagtatttataagggataaatttgtcaaattctacttaaaaatctgaga 21443033  T
Q  374 aggtcaagtatt 385  Q
    ||||||||||||    
T  21443034 aggtcaagtatt 21443045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 207 - 385
Target Start/End: Complemental strand, 48838289 - 48838113
Alignment:
Q  207 aaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactt 306  Q
    ||||||||| | ||||| ||||||| ||||| |||||  |||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  48838289 aaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaacttt--cacttttaagtaatgattactttctttgttccactacacactt 48838192  T
Q  307 taacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    | ||||||  ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||    
T  48838191 ttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaagtcaagtatt 48838113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 22620041 - 22619883
Alignment:
Q  147 cgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgcca 246  Q
    |||| ||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||   |    
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  247 ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
    ||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  22619941 ttatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 22619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 22338268 - 22338101
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| || || | ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  22338268 tactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattg 22338169  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 307  Q
    |||||   |||||||| ||||   ||||||||||| |||| ||||||||   | ||||||||||||||||    
T  22338168 cccttattattatttttaaac--cttcacttttaaataataattactttaaatattccactacaaacttt 22338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 7380535 - 7380602
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaat 205  Q
    |||| ||||||||| |||||||||||  || |||| ||||||||| ||||||| |||||||| |||||    
T  7380535 tacttcctccgtctttgaataagtgatctacttgaccatttcacacagattaaaaaaagtgttaaaat 7380602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 22337818 - 22337763
Alignment:
Q  331 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 386  Q
    ||||||||||||||  |||||| ||||||||  |||| ||||||||||||||||||    
T  22337818 ttataaggggtaaaattgtcaatttttgctttaaaatttgagaaggtcaagtattt 22337763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 4040947 - 4040980
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttg 171  Q
    ||||||||||||||||||||||||||| ||||||    
T  4040947 tactccctccgtctctgaataagtgacctatttg 4040980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 36070257 - 36070217
Alignment:
Q  176 tttcacatagattaagaaaagtgtaaaaatgaaagaaagag 216  Q
    |||||||||||||||||||| |||| |||||||||| ||||    
T  36070257 tttcacatagattaagaaaaatgtataaatgaaagagagag 36070217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 1929217 - 1929463
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||    
T  1929217 tactccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 1929316  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  1929317 cccttgtcattattttgaaactttttcacttttaagtaatgatt-ttttttttgttccactacaaactttaacatggggaccacaaaaaatatttataag 1929415  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  1929416 gggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 1929463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 32046133 - 32045886
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||||| || ||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||    
T  32046133 tactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttg 32046034  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32046033 cccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 32045934  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  32045933 gggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtatt 32045886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 46862856 - 46862609
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||| |||    
T  46862856 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttg 46862757  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46862756 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 46862657  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  46862656 gggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtatt 46862609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 50777297 - 50777050
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||    
T  50777297 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 50777198  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  50777197 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccccaaaaagtatttataag 50777098  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  50777097 gggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtatt 50777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 28036700 - 28036948
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatactttt-actgaatt 236  Q
    |||||||| |||| || |||||||||| ||||||| ||||||||| | ||||||||||||||||| || ||||||||||||||||| |||| ||||| ||    
T  28036700 tactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagtt 28036799  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28036800 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 28036899  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28036900 gggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 28036948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 141 - 385
Target Start/End: Original strand, 39150900 - 39151144
Alignment:
Q  141 tccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgccc 240  Q
    |||||||||| || |||||||||  ||||||| ||||||||| |||||||||||| |||||| || ||||||||||| ||||||||||||||| ||||||    
T  39150900 tccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccc 39150999  T
Q  241 ttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagggg 340  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  39151000 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataagggg 39151099  T
Q  341 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  39151100 taaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 39151144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 174 - 385
Target Start/End: Complemental strand, 38321909 - 38321698
Alignment:
Q  174 catttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaag 273  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  38321909 catttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaag 38321810  T
Q  274 taatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgaga 373  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  38321809 taatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataagggttaaatcttttaaattttgcttagaaatctgaga 38321710  T
Q  374 aggtcaagtatt 385  Q
    ||||||||||||    
T  38321709 aggtcaagtatt 38321698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 142 - 385
Target Start/End: Complemental strand, 46371217 - 46370980
Alignment:
Q  142 ccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgccct 241  Q
    ||||||||| || |||||||||  ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46371217 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgccct 46371118  T
Q  242 tgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggt 341  Q
    || |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  46371117 tgtcattattttgaaactttttca-----aagtaatgattactttctttgttccactacaaactttaatatggg-accacaaaaagtatttataaggggt 46371024  T
Q  342 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  46371023 aaatttgtcaaattttgcttagaaatctgagaaggtcaagtatt 46370980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 140 - 385
Target Start/End: Complemental strand, 8229362 - 8229116
Alignment:
Q  140 ctccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaaga-gagtgatacttttactgaattgc 238  Q
    ||||||| ||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||| |||||| ||| | |||||||| ||||||||| ||||    
T  8229362 ctccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttactgagttgc 8229263  T
Q  239 ccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagg 338  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  8229262 ccttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaactttaacatggggaccacaaaaagtatttataagg 8229163  T
Q  339 ggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||| |||||||||||||||| |||||| ||||||| |||||||    
T  8229162 ggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtatt 8229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 1207452 - 1207697
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || ||||  |||| || |||| ||||||||| ||||||||||||||||| | |||||||||||| | ||||| |||||||||||||    
T  1207452 tactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattg 1207551  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacat-gggaaccacaaaaagtatttataa 336  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||  | ||||||||||||||    
T  1207552 cccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaactttaacataggggac--ccaaaagtatttataa 1207649  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1207650 -gggtaaatctgtcaaattctgcttagaaatctgagaaggtcaagtatt 1207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 40562436 - 40562681
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || ||||  |||| || |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  40562436 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 40562535  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    ||||||  |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||||| ||||||||||||    
T  40562536 cccttgttattattttgaaactttt--acttttaagtaatgattactttctttgttctactacaaacttttacatggagaccacaaagagtatttataag 40562633  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||| | ||||||| |||||| |||| |||||| ||||||||||    
T  40562634 gggtaaatttatcaaattctgcttaaaaatatgagaatgtcaagtatt 40562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 138 - 377
Target Start/End: Original strand, 9129401 - 9129641
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatact---tttactgaa 234  Q
    ||||||||| ||| || |||| |||| ||| ||||  |||||||| ||||||| ||||||||||| || ||||||||||| ||||| |   |||||| ||    
T  9129401 tactccctcggtccctcaatacgtgatatacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaa 9129500  T
Q  235 ttgcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttat 334  Q
    ||| |||||  |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||||| |||||||    
T  9129501 ttgtccttgttattatttttaaacttt--cacttttaagtaatgattactttctttgttccactacaaaattttacatggagaccacaaaaaatatttat 9129598  T
Q  335 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggt 377  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||    
T  9129599 aaggggtaaatttatcaaattctgcttaaaaatctgagaaggt 9129641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 225 - 385
Target Start/End: Complemental strand, 38817984 - 38817827
Alignment:
Q  225 ttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaa 324  Q
    ||||| ||||||| |||||  ||||||||||||| ||  || ||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  38817984 ttttattgaattgtccttgttattattttgaaacctt--ca-ttttaagtaattattactttctttgtttcactacaaacttttacatggggaccacaaa 38817888  T
Q  325 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||| ||||    
T  38817887 aagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatatt 38817827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 9590673 - 9590625
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    |||| |||||||||||||||||||||| |||| |||||||||| |||||    
T  9590673 ttgaccatttcacatagattaagaaaattgtataaatgaaagagagaga 9590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 36326154 - 36326202
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    |||| ||||||||| ||||||||||||||||| |||||||||| |||||    
T  36326154 ttgaacatttcacacagattaagaaaagtgtataaatgaaagagagaga 36326202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 14222899 - 14222837
Alignment:
Q  155 aataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    ||||||||||||| ||| |||||||||| | |||||| ||||  || ||||||||||||||||    
T  14222899 aataagtgacatacttgctcatttcacacaaattaaggaaagactataaatgaaagaaagaga 14222837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 21304756 - 21304798
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaaga 211  Q
    |||||||||||||||| |||||||||| |||| ||||||||||    
T  21304756 ttgatcatttcacataaattaagaaaaatgtataaatgaaaga 21304798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 52382302 - 52382344
Alignment:
Q  176 tttcacatagattaagaaaagtgtaaaaatgaaagaaagagag 218  Q
    |||||||||||||||||||| |||| |||||||||| ||||||    
T  52382302 tttcacatagattaagaaaaatgtataaatgaaagagagagag 52382344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 14352721 - 14352688
Alignment:
Q  176 tttcacatagattaagaaaagtgtaaaaatgaaa 209  Q
    ||||||||||||||||||||||||| ||||||||    
T  14352721 tttcacatagattaagaaaagtgtataaatgaaa 14352688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 20986544 - 20986581
Alignment:
Q  176 tttcacatagattaagaaaagtgtaaaaatgaaagaaa 213  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  20986544 tttcacacagattaagaaaagtgtataaatgaaagaaa 20986581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 50334080 - 50334035
Alignment:
Q  172 atcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    ||||||||| | ||||||||||||||||| ||| ||||||||||||    
T  50334080 atcatttcatacagattaagaaaagtgtataaacgaaagaaagaga 50334035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 31634244 - 31634292
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagaga 217  Q
    |||| |||||||||||||||||||||| |||| |||| ||||| |||||    
T  31634244 ttgaccatttcacatagattaagaaaaatgtataaataaaagagagaga 31634292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 385
Target Start/End: Original strand, 28541586 - 28541834
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| || |||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||  ||    
T  28541586 gtactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggtt 28541685  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28541686 gcccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaactttaacatggggaccacaaaaagtatttataa 28541785  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28541786 ggggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 28541834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 16436075 - 16435832
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||    ||||||||||||||| |||    
T  16436075 tactccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaag----tgatacttttactgagttg 16435980  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  16435979 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgagaaccacaaaaagtatttatatg 16435880  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16435879 gggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtatt 16435832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 12350573 - 12350325
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    ||||||||||||||  | |||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||    
T  12350573 gtactccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagtt 12350474  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| |||||    
T  12350473 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaactttaacatgaggaccacaaaaagtatatataa 12350374  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  12350373 ggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatatt 12350325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 153 - 385
Target Start/End: Complemental strand, 29182876 - 29182644
Alignment:
Q  153 tgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattt 252  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  29182876 tgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattattt 29182777  T
Q  253 tgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaa 352  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||    
T  29182776 tgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaatgtatttataagaggtaaatctgtcaa 29182677  T
Q  353 attttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||| |||||||||||||||||||||||||    
T  29182676 attttgcctagaaatctgagaaggtcaagtatt 29182644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 1241409 - 1241162
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaatt 236  Q
    |||||||||||||| |||||||||| |  ||||| ||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||| ||    
T  1241409 gtactccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagtt 1241310  T
Q  237 gcccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataa 336  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  1241309 gcccttgtcattattttgaaactttttca-ttttaagtaatgattactttctttgttccactgcaaactttaatatggggaccacaaaaagtatttataa 1241211  T
Q  337 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  1241210 gaggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtatt 1241162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 30736719 - 30736472
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||||||||||| ||||  |||| ||||| |  |||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  30736719 tactccctccgtctctcaatacttgacctatttaactatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 30736620  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||    
T  30736619 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggattacaaaaagtatttataag 30736520  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30736519 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 30736472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 175 - 385
Target Start/End: Original strand, 7271115 - 7271325
Alignment:
Q  175 atttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagt 274  Q
    |||||||| ||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7271115 atttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcacttttaagt 7271214  T
Q  275 aatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaa 374  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  7271215 aatgattactttctttattccactacaaactttaacatggggacaacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaa 7271314  T
Q  375 ggtcaagtatt 385  Q
    |||||||||||    
T  7271315 ggtcaagtatt 7271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 140 - 385
Target Start/End: Complemental strand, 13042268 - 13042025
Alignment:
Q  140 ctccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcc 239  Q
    |||||||||||  |||||||||||  |||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  13042268 ctccctccgtccttgaataagtgatctatttgattatttcacacagattaa-aaaagtgtaaagatgaaagaaagagagtgatatttttactgagttgcc 13042170  T
Q  240 cttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggg 339  Q
    |||| ||||||||  ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  13042169 cttgtcattatttaaaaaatttt-cacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaaagtatttataaggg 13042071  T
Q  340 gtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13042070 gtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 13042025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 31013495 - 31013742
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||| |||||| || ||||  |||| ||||||| ||||||| | ||||||||||||||||||||| |||||||||| | ||||| |||||||||||||    
T  31013495 tactccttccgtccctcaatacttgacctatttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattg 31013594  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||  ||||||||| ||||||||||    
T  31013595 cccttatcattattttgaaactttttcacttttaagtaatgattattttctttgttctactacaaactttaatatgggggccacaaaaaatatttataag 31013694  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    || |||||| |||||||| ||||||||||||||||||| |||||||||    
T  31013695 ggataaatccgtcaaattctgcttagaaatctgagaagatcaagtatt 31013742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 161 - 385
Target Start/End: Complemental strand, 13210618 - 13210397
Alignment:
Q  161 tgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactt 260  Q
    ||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||  ||||||||||| |||||||  || ||||||||||||    
T  13210618 tgacatacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgttat-attttgaaactt 13210520  T
Q  261 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgct 360  Q
    |  |||||||||||||  ||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| ||||||||| ||||    
T  13210519 t--cacttttaagtaagaattactttctttgttccactacaaacttttacatggagaccacaaaaaatatttataatgggtaaatttgtcaaattctgct 13210422  T
Q  361 tagaaatctgagaaggtcaagtatt 385  Q
    || |||| |||||||||||||||||    
T  13210421 taaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 190 - 385
Target Start/End: Complemental strand, 1870780 - 1870587
Alignment:
Q  190 agaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcacttttaagtaatgattactttctt 289  Q
    |||||||| |||| ||||||||||| || ||||| ||||||| |||||||||||  ||||||||||| | ||  ||||||||||||||||||||||||||    
T  1870780 agaaaagtataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagcctt--cacttttaagtaatgattactttctt 1870683  T
Q  290 tgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||||||||||||| ||||||  | ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  1870682 tgttccactacaaacttttacatggagatcacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtatt 1870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 31833622 - 31833751
Alignment:
Q  169 ttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgcccttgccattattttgaaactttttcactt 268  Q
    |||| ||||| ||| | ||||||||||||||||| |||||||||| | | ||||| ||||||| ||||||||||   |||||||||||||   |||| ||    
T  31833622 ttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccctt---attattttgaaac--cttcattt 31833716  T
Q  269 ttaagtaatgattactttctttgttccactacaaa 303  Q
    |||||||||||||| ||||||||||||||||||||    
T  31833717 ttaagtaatgattattttctttgttccactacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 31833747 - 31833811
Alignment:
Q  320 acaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtat 384  Q
    ||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||||||||    
T  31833747 acaaaaagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtat 31833811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 28541888 - 28541854
Alignment:
Q  137 gtactccctccgtctctgaataagtgacatatttg 171  Q
    |||||||||||||||||||||||||||| ||||||    
T  28541888 gtactccctccgtctctgaataagtgacttatttg 28541854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 3674134 - 3674170
Alignment:
Q  105 agccttaatggtctatttactcaaattattacgtact 141  Q
    |||||||||  ||||||||||||||||||||||||||    
T  3674134 agccttaattctctatttactcaaattattacgtact 3674170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 138 - 385
Target Start/End: Original strand, 10017 - 10264
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    |||||||||| || || |||||||||| ||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| |||    
T  10017 tactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 10116  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  10117 cccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataag 10216  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||    
T  10217 ggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 10264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 70053 - 69806
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || |||||||||| ||||||| ||||| | | ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||    
T  70053 tactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttg 69954  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||    
T  69953 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaatacggggatcacaaaaagtatttataag 69854  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||    
T  69853 cggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 69806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 69753 - 69786
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttg 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  69753 tactccctccgtccctgaataagtgacatatttg 69786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 4114 - 3867
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| |||||||| | |  ||||||| ||||||||| ||||||||||||| ||||| |||||| ||| |||| | |||||||||||| ||     
T  4114 tactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtta 4015  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  4014 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaactttaacatgaggaccgcaaaaagtatttataag 3915  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  3914 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 141 - 385
Target Start/End: Complemental strand, 16641 - 16410
Alignment:
Q  141 tccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattgccc 240  Q
    |||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |             ||||     
T  16641 tccctccgtccctaaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtggt-------------tgcct 16555  T
Q  241 ttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataagggg 340  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||    
T  16554 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaaggg 16455  T
Q  341 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  16454 taaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 92169 - 92346
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||  ||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  92169 tactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttg 92268  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggg 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92269 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggg 92346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 1267 - 1032
Alignment:
Q  138 tactccctccgtctctgaataagtgacatatttgatcatttcacatagattaagaaaagtgtaaaaatgaaagaaagagagtgatacttttactgaattg 237  Q
    ||||||||||||| || ||||  | || || |||| ||||||||| | ||||| | ||||||||| |||||||||||||| ||||| |||||||||||||    
T  1267 tactccctccgtccctcaatacttcacctacttgaccatttcacacaaattaa-acaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 1169  T
Q  238 cccttgccattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataag 337  Q
    | ||||  ||||||||||||| ||  ||||||||||||||||||         ||||||||||||||||| ||||||  |||||||||||||||||||||    
T  1168 ctcttgttattattttgaaacctt--cacttttaagtaatgatt---------gttccactacaaacttttacatggagaccacaaaaagtatttataag 1080  T
Q  338 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 385  Q
    |||||||| ||||||||  |||||| |||||||||||| |||||||||    
T  1079 gggtaaatttgtcaaatcctgcttaaaaatctgagaagctcaagtatt 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 186 times since January 2019
Visitors: 6046