View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_72 (Length: 386)
Name: NF0846_high_72
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 357
Target Start/End: Original strand, 34916193 - 34916346
Alignment:
| Q |
201 |
ggtctaaaaaggttatgatgatgtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgc |
300 |
Q |
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| T |
34916193 |
ggtctaaaaaggttatga---tgtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgc |
34916289 |
T |
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| Q |
301 |
tgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatct |
357 |
Q |
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| T |
34916290 |
tgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatct |
34916346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 34916008 - 34916120
Alignment:
| Q |
12 |
atgaacagaaataataaggcatatccttatgcctctaggaagcctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaag |
111 |
Q |
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| T |
34916008 |
atgaacagaaataataaggcatatccttatgcctctaggaagcctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaag |
34916107 |
T |
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| Q |
112 |
atcggtacataca |
124 |
Q |
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| T |
34916108 |
atcggtacataca |
34916120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 43865998 - 43866068
Alignment:
| Q |
281 |
aggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataa |
351 |
Q |
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| T |
43865998 |
aggaagtggtctcatattgctctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataa |
43866068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 17176140 - 17176099
Alignment:
| Q |
317 |
agaattggaaaacaatgcagagaaagatggcataatcatctt |
358 |
Q |
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| T |
17176140 |
agaattggaaaacaatgcagagagagatggaataatcatctt |
17176099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 21551043 - 21550959
Alignment:
| Q |
273 |
atggtttgaggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatct |
357 |
Q |
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| T |
21551043 |
atggattgagaaaatggactgatattgctcagaaattgcctggtagaatgggaaaacagtgtagagagcgatggattaatcatct |
21550959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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