View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_77 (Length: 383)
Name: NF0846_high_77
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_77 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 1814997 - 1815334
Alignment:
| Q |
8 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1814997 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
1815096 |
T |
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| Q |
108 |
tgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaatatttgcatgttcttgctcttgcatgttgtttgattcttcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1815097 |
tgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaacatttgcatgttcttgctcttgcatgttgtttgattcttcc |
1815196 |
T |
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| Q |
208 |
attgtaaaataatctaattggacaaaacagtgagagagagatatatataatgcaatgcaagtaagttattacaaagactgtgtttgtgtttaaaaggtaa |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1815197 |
attgtaaaataatctaattggacaaaacagt----gagagatatatataatgcaatgcaagtaagttataacaaagactgtgtttgtgtttaaaaggtaa |
1815292 |
T |
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| Q |
308 |
aacaaattaaaagaggtaagcttcttcgtaggaaggtacgtgagtgg |
354 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1815293 |
aac-----aaaagaggtaagcttcttcgtaggaaggtacgtgagtgg |
1815334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 1794968 - 1795098
Alignment:
| Q |
15 |
aaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttctgataca |
114 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| || | | || ||||||||| || |
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| T |
1794968 |
aaaagctgctatatcatatgctattgctgccatttgtggttcttcatagttccctaaccatattctgcttttcttctcttgaacccttatttctgatgca |
1795067 |
T |
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| Q |
115 |
aatttcccccattttcttttcctaactccta |
145 |
Q |
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| T |
1795068 |
aatttcccccattttctcttcctaactccta |
1795098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 1812373 - 1812585
Alignment:
| Q |
8 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
107 |
Q |
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|||| |||||||||||||||||| | || | ||||||||||||||||||||||||| | ||||||||||||||| | ||| | ||| | || || |||| |
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| T |
1812373 |
tgaggtgaaaagctgctatatcacatgcagttgctgccatttgtggttcttcataggtacctaaccatattctgatgttcctcccttgatcccttatttt |
1812472 |
T |
|
| Q |
108 |
tgatacaaatttcccccattttcttttcctaactcctatatagga---------tgttggaggagtaatatttgcatgttcttgctcttgcatgttgttt |
198 |
Q |
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|||| ||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| || ||| ||||||| ||||||||||| ||||| |
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| T |
1812473 |
tgatgcaaatttcccccattttctcttcctaactcccatattggatgatgctggtgttggaggaggaacattcacatgttcatgctcttgcattatgttt |
1812572 |
T |
|
| Q |
199 |
gattcttccattg |
211 |
Q |
| |
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||||||||||||| |
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| T |
1812573 |
gattcttccattg |
1812585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 1796002 - 1796053
Alignment:
| Q |
154 |
gttggaggagtaatatttgcatgttcttgctcttgcatgttgtttgattctt |
205 |
Q |
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|||||||||| || ||| |||||||||||||||||||| |||||||||||| |
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| T |
1796002 |
gttggaggaggaacattcacatgttcttgctcttgcatgatgtttgattctt |
1796053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 14489007 - 14488864
Alignment:
| Q |
13 |
tgaaaagctgctatatcatacgctgctgctgc---catttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttctg |
109 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||| |||| ||||| ||| | || | ||||||| |
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| T |
14489007 |
tgaaaagctgctatatcatatgctgctgctgctgccacttgtggttcttcatagcttc-taaccatattttgcttttcttcccttgatcctttatttctg |
14488909 |
T |
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| Q |
110 |
atacaaatttcccccattttcttttcctaactcctatataggatg |
154 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
14488908 |
atggaaatttcccccattttcccttcctaactcctatataggatg |
14488864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 14488225 - 14488158
Alignment:
| Q |
269 |
taagttattacaaagactgtgtttgtgtttaaaaggtaaaacaaattaaaagaggtaagcttcttcgtaggaa |
341 |
Q |
| |
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||||||||||||||| |||| |||||||| |||||| |||| |||||||||||||||| ||||||||| |
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| T |
14488225 |
taagttattacaaagtttgtgattgtgtttgaaaggtgaaac-----aaaagaggtaagcttcctcgtaggaa |
14488158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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