View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_high_84 (Length: 373)
Name: NF0846_high_84
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_high_84 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 110 - 322
Target Start/End: Complemental strand, 37059663 - 37059449
Alignment:
| Q |
110 |
atttaactcgtatcctagattgctcgttgaattcatttgttgtggacaaaatattttgaatcaacggtac--ctctgacaatgttattatttacaagaaa |
207 |
Q |
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| T |
37059663 |
atttaactcgtatcctagattgttcgttcaattcatttgttgtggagaaactattttgaatcaacggtacacctctgacaatgttattatttacaagaaa |
37059564 |
T |
|
| Q |
208 |
ttgttcacggtatatagaagtctaagaagaagggtgatgttgctttcaagtttcaagcttgatttggaaaaacctttgacaatgttaatgactatttggt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059563 |
ttgttcacggtatatagaagtctaagaagaagggtgatgttgctttcaagtttcaagcttgatttggaaaaacctttgacaatgttaatgactatttggt |
37059464 |
T |
|
| Q |
308 |
atgagatattattcg |
322 |
Q |
| |
|
|||||||||| |||| |
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| T |
37059463 |
atgagatattgttcg |
37059449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 30638923 - 30638859
Alignment:
| Q |
110 |
atttaactcgtatcctagattgctcgttgaattcatttgttgtggacaaaatattttgaatcaac |
174 |
Q |
| |
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|||||||| ||||||||||||||||| || || |||||||||| | ||| |||||| ||||||| |
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| T |
30638923 |
atttaacttgtatcctagattgctcgccgagtttatttgttgtgaagaaactattttaaatcaac |
30638859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 5473612 - 5473676
Alignment:
| Q |
110 |
atttaactcgtatcctagattgctcgttgaattcatttgttgtggacaaaatattttgaatcaac |
174 |
Q |
| |
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|||||||| ||||||||||||||| |||| || ||||||||||| ||||||||| ||||||| |
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| T |
5473612 |
atttaacttgtatcctagattgctttttgagtttgtttgttgtggagaaaatatttcaaatcaac |
5473676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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