View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_1 (Length: 909)
Name: NF0846_low_1
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_1 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0922 (1 HSPs) |
| | |
|
| [»] scaffold1147 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 478 - 814
Target Start/End: Complemental strand, 8021928 - 8021597
Alignment:
| Q |
478 |
ttcataggttctcttaattagattaattaccgctaaaactttgtatctataacttgtcaattgttttgaacagctaaatgaatttattaatgaggaacgt |
577 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8021928 |
ttcataggttctcttacttagattaattatcgctaaaactttgtatttataacttgtcaattgttttgaacagctaaatgaatttattaatgaggaacgt |
8021829 |
T |
|
| Q |
578 |
atgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaacttgaatgcaacgnnnnnnnntagtctaataaccaagaggatcacttaa |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
8021828 |
atgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaaattgaatgcaacg-aaaaaaatagtctaataactaagaggatcacttaa |
8021730 |
T |
|
| Q |
678 |
aggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatactt-cac |
776 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8021729 |
ag------catcccgtgttcgtaaaatttgtgcctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttccac |
8021636 |
T |
|
| Q |
777 |
acgttgtgtcaa-atgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8021635 |
acgttgtgtcaagatgtgttttgagtccaacaatttttg |
8021597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 8022434 - 8022184
Alignment:
| Q |
11 |
cagagaaacagggtgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgttaaatgctagagatcatgtcaaccatgatgtccatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8022434 |
cagagaaacagggtgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgctaaatgctagagatcatgtcaaccatgatgtccatca |
8022335 |
T |
|
| Q |
111 |
taggctatggaagcctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8022334 |
taggctatggaagcctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaa |
8022235 |
T |
|
| Q |
211 |
agtttaggaagtttgtacttgtacaaaatcagaactaagctatactcaaca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022234 |
agtttaggaagtttgtacttgtacaaaatcagaactaagctatactcaaca |
8022184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 315 - 472
Target Start/End: Complemental strand, 8022131 - 8021974
Alignment:
| Q |
315 |
gtaagatatatatagaggttgagaatgagttatttctatatttttatgattgtatataggttaaaatttaggttaagttaccaacaatattttgtcaaag |
414 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022131 |
gtaagatatatatagaggttgagaatgtgttatttctatatttttatgattgtatataggttaaaatttaggttaagttaccaacaatattttgtcaaag |
8022032 |
T |
|
| Q |
415 |
tggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022031 |
tggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc |
8021974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 576 - 814
Target Start/End: Complemental strand, 20094 - 19861
Alignment:
| Q |
576 |
gtatgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaacttgaatgcaacgnnnnnnnntagtctaataaccaagaggatcactt |
675 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |||||||| || |||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
20094 |
gtatgttcgagcaataaataaaatattcaaggataaagaaaatcagggaactgctagaatgcaacgaaaaaaaatagtttaataaccaataggatcactt |
19995 |
T |
|
| Q |
676 |
aaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttca |
775 |
Q |
| |
|
|||| || |||| ||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19994 |
aaag------caccccgagtttgtaaaatttgtgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatccttca |
19901 |
T |
|
| Q |
776 |
cacgttgtgtcaa-atgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
|| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
19900 |
catgttgcgtcaagatgtgttttgagtccaacaatttttg |
19861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 8e-39; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 650 - 814
Target Start/End: Complemental strand, 28187579 - 28187420
Alignment:
| Q |
650 |
tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga |
749 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || |||| || ||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
28187579 |
tagtctaatagccaataggatcacttaaag------cagcccgagtatgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcacagga |
28187486 |
T |
|
| Q |
750 |
agccaattgatgcttaagatacttcacacgttgtgtc-aaatgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28187485 |
agccaattgatgcttaagatcctccacatgttgtgtcaaaatgtgttttgagtccaacaatttttg |
28187420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 650 - 814
Target Start/End: Original strand, 17743718 - 17743877
Alignment:
| Q |
650 |
tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga |
749 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17743718 |
tagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagga |
17743811 |
T |
|
| Q |
750 |
agccaattgatgcttaagatacttcacacgttgtgtc-aaatgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
| |||||||||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
17743812 |
atccaattgatgcttaagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttg |
17743877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 650 - 814
Target Start/End: Original strand, 19045038 - 19045197
Alignment:
| Q |
650 |
tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga |
749 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
19045038 |
tagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagga |
19045131 |
T |
|
| Q |
750 |
agccaattgatgcttaagatacttcacacgttgtgtc-aaatgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
| |||||||||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
19045132 |
atccaattgatgcttaagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttg |
19045197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 689 - 814
Target Start/End: Complemental strand, 28163536 - 28163410
Alignment:
| Q |
689 |
cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtc-a |
787 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||| |||| ||| | |
|
|
| T |
28163536 |
cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaagatccgccacatgttgagtcaa |
28163437 |
T |
|
| Q |
788 |
aatgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28163436 |
aatgtgttttgagtccaacaatttttg |
28163410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 699 - 814
Target Start/End: Complemental strand, 11422101 - 11421985
Alignment:
| Q |
699 |
taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtc-aaatgtgtttt |
797 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || ||| |||| ||| |||||| |||| |
|
|
| T |
11422101 |
taaaaattgtgcctcctgctgagtgatgctctgtaaaacagcttcggaggaagccaattgatgcttaagatcctccacgtgttgagtcaaaatgtatttt |
11422002 |
T |
|
| Q |
798 |
gagtccaacaatttttg |
814 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
11422001 |
gagttcaacaatttttg |
11421985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 757
Target Start/End: Complemental strand, 28060286 - 28060218
Alignment:
| Q |
689 |
cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt |
757 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
28060286 |
cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28060218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 757
Target Start/End: Complemental strand, 28070711 - 28070643
Alignment:
| Q |
689 |
cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt |
757 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
28070711 |
cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28070643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 28058008 - 28057946
Alignment:
| Q |
753 |
caattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
||||||||||||||||| || |||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28058008 |
caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttg |
28057946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 28068433 - 28068371
Alignment:
| Q |
753 |
caattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
||||||||||||||||| || |||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28068433 |
caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttg |
28068371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 768
Target Start/End: Original strand, 26126306 - 26126365
Alignment:
| Q |
709 |
acctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaaga |
768 |
Q |
| |
|
||||| |||||| |||| |||| |||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
26126306 |
acctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga |
26126365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 768
Target Start/End: Original strand, 26176357 - 26176416
Alignment:
| Q |
709 |
acctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaaga |
768 |
Q |
| |
|
||||| |||||| |||| |||| |||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
26176357 |
acctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga |
26176416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 769
Target Start/End: Complemental strand, 28152556 - 28152501
Alignment:
| Q |
714 |
ctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagat |
769 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
28152556 |
ctgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagat |
28152501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 769
Target Start/End: Original strand, 28508235 - 28508296
Alignment:
| Q |
708 |
tacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagat |
769 |
Q |
| |
|
|||||| |||||| |||| |||| |||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
28508235 |
tacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagat |
28508296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 699 - 814
Target Start/End: Complemental strand, 2615 - 2499
Alignment:
| Q |
699 |
taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtc-aaatgtgtttt |
797 |
Q |
| |
|
|||||| ||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||| || |||| |||| ||| ||||||||||| |
|
|
| T |
2615 |
taaaatctgtgcctcctgttgagtgatgttctgcaaaacagcttcaaaggaagccaattgatgtttaagatcctccacatgttgagtcaaaatgtgtttt |
2516 |
T |
|
| Q |
798 |
gagtccaacaatttttg |
814 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
2515 |
gagtccaaaaaattttg |
2499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1147 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1147
Description:
Target: scaffold1147; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 814
Target Start/End: Complemental strand, 1092 - 1033
Alignment:
| Q |
756 |
ttgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttg |
814 |
Q |
| |
|
|||||||||||||| || |||| |||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
1092 |
ttgatgcttaagatcctccacatgttgagtcaaaatgtgttttaagtccaacaatttttg |
1033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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