View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_10 (Length: 653)
Name: NF0846_low_10
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 365 - 580
Target Start/End: Original strand, 10545187 - 10545402
Alignment:
| Q |
365 |
caataaggaagaagaacacgctagggcacaattacttagtccacaggttattaagaaccctagtgataaagttggttgtaactaactctcagagttagtt |
464 |
Q |
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| T |
10545187 |
caataaggaagaagaacacgctagggcacagttacttagtccacgggttattaacaaccctagtgataaagttggttgtaactaactctcagagttagtt |
10545286 |
T |
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| Q |
465 |
atgatagaggacatgatcctataagatagagttcacaatatcttagcatatactatcattgtaactctatatatagttgtaacaccttcatccttcagca |
564 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
10545287 |
atgatagaggacgtgatcctataatatagagttcacaatagcttaacatatactatcattgtaactctatatatagttgtaacaccttcatgcttcagta |
10545386 |
T |
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| Q |
565 |
atgaaaataaatatca |
580 |
Q |
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||||||| | |||||| |
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| T |
10545387 |
atgaaaacagatatca |
10545402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 5918432 - 5918501
Alignment:
| Q |
231 |
gagaaagaatatgaatgagaagtgttattctcattaatttgtgaatggagatacaatgtgagtatataca |
300 |
Q |
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| T |
5918432 |
gagaaagaatatgaatgaaaagtgttattctcattaacttgtgaatgaagatacaaggtgtttatataca |
5918501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 5922116 - 5922174
Alignment:
| Q |
228 |
agagagaaagaatatgaatgagaagtgttattctcattaatttgtgaatggagatacaa |
286 |
Q |
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| T |
5922116 |
agagagagagaatatgaatgaaaagtgttattctcattaacttgtgaatgaagatacaa |
5922174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 15307965 - 15307898
Alignment:
| Q |
322 |
tattgaaacaggatattaaagagttagaatcaaatctgctagtcaataaggaagaagaacacgctagg |
389 |
Q |
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|||| ||||| ||||| || |||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
15307965 |
tattaaaacaagatatcaaggagttagagtcaagcttgctagccaataaggaagaagaacacgctagg |
15307898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 15313259 - 15313192
Alignment:
| Q |
322 |
tattgaaacaggatattaaagagttagaatcaaatctgctagtcaataaggaagaagaacacgctagg |
389 |
Q |
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|||| ||||| ||||| || |||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
15313259 |
tattaaaacaagatatcaaggagttagagtcaagcttgctagccaataaggaagaagaacacgctagg |
15313192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 10596448 - 10596528
Alignment:
| Q |
322 |
tattgaaacaggatattaaagagttagaatcaaatctgctagtcaataaggaagaagaacacgctagggcacaattactta |
402 |
Q |
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| T |
10596448 |
tattgaaacaagatataaaagagttggagtcaagcttgctagccaataaggaggaagaacacgctagggcacaattactta |
10596528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 36164932 - 36164996
Alignment:
| Q |
223 |
tattaagagagaaagaatatgaatgagaagtgttattctcattaatttgtgaatggagatacaatg |
288 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||| |
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| T |
36164932 |
tattaagagagaaagaatatgaatgaaaagtgttgttctcatt-acttgtgaatgaagatacaatg |
36164996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 46142883 - 46142962
Alignment:
| Q |
322 |
tattgaaacaggatattaaagagttagaatcaaatctgctagtcaataaggaagaagaacacgctagggcacaattactt |
401 |
Q |
| |
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|||||||||| || || || |||||||| |||| ||||| ||||||||||||||||||||||| |||| |||||||| |
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| T |
46142883 |
tattgaaacaagacatcaatgagttagagtcaagcttgctacccaataaggaagaagaacacgctacggcataattactt |
46142962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 32610309 - 32610353
Alignment:
| Q |
221 |
attattaagagagaaagaatatgaatgagaagtgttattctcatt |
265 |
Q |
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|||||||||||||||||| | ||||||| ||||||| |||||||| |
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| T |
32610309 |
attattaagagagaaagagtgtgaatgaaaagtgttgttctcatt |
32610353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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