View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_102 (Length: 373)
Name: NF0846_low_102
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 31 - 365
Target Start/End: Complemental strand, 5546350 - 5546016
Alignment:
| Q |
31 |
ccatctatatatataacttcatattacattctccacaaacatacaccattattctcccattcttttttcttctatagaatcatatatacttgcaattatg |
130 |
Q |
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| T |
5546350 |
ccatctatatatataacttcatattacattctccacaaacatacaccattattctcccattcttttttcttctatagaatcatatatacttgcaattatg |
5546251 |
T |
|
| Q |
131 |
agaattgatgtatccgttagtgtgattgttcgagaattcgaagttaataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggaccta |
230 |
Q |
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| T |
5546250 |
agagttgatgtatccgttagtgtgattgttcgagaattcgaagttaataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggaccta |
5546151 |
T |
|
| Q |
231 |
gtaaccaactttctctcttcaccgacatgcttggtgaccccatttgcagggtccgccactccccttcttacctcatgctggtatatattcacaaaaatca |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5546150 |
gtaaccaactttctctcttcaccgacatgcttggtgaccccatttgcagggtccgccactcaccttcttacctcatgctggtatatattcacaaaaatca |
5546051 |
T |
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| Q |
331 |
ttcattttcactattctattactttcattcatctc |
365 |
Q |
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|||||||||||||||||||||||| ||||| |||| |
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| T |
5546050 |
ttcattttcactattctattacttacattcttctc |
5546016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 39917998 - 39918108
Alignment:
| Q |
175 |
taataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggacctagtaaccaactttctctcttcaccgacatgcttggtgaccccatt |
274 |
Q |
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||||||||| | |||||| || ||||||||||||| | ||||||||||||||| ||| | ||||| |||||||||||| ||| |||||||| ||| |
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| T |
39917998 |
taataaagatagagaaagtgttgaagcagttgaaaaaatatgtgaagttggacccagtggtaagctttccctcttcaccgacttgcacggtgaccctatt |
39918097 |
T |
|
| Q |
275 |
tgcagggtccg |
285 |
Q |
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||||| ||||| |
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| T |
39918098 |
tgcagagtccg |
39918108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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