View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_103 (Length: 373)
Name: NF0846_low_103
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_103 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 25140927 - 25140585
Alignment:
| Q |
1 |
tatccttatctaaacaaacacaataaatttcaaactcaatttaatctcaaataaactaacataccatcttaaaaccccttaaactataattgaatgtgac |
100 |
Q |
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| T |
25140927 |
tatccttatctaaacaaacacaacaaatttcaaactcaatttaatctcaaataaactaacaaaccatcttaaaaccccttaaactataattgaatgtgac |
25140828 |
T |
|
| Q |
101 |
cctctaatcaaattccttaaaacaaaatacgttacattacaaacctagtcaaatttaacattccaacaaaaagagaatcatgcaaaattcactcataact |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25140827 |
cctctaatcaaattccttaaaacaaaatacattacattacaaacctagtcaaatataacattccaacaaaa--agaatcatgcaaaattcactcataact |
25140730 |
T |
|
| Q |
201 |
tcaacacgaattatccttatctaaacaaacacaacacaaacttcaaactcaattgaagcgtcaataaaataactaacaatcataaaaccacataaactaa |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25140729 |
tcaacacaaattatccttatctaaacaaacacaacacaaacttcaaactcaattgaagcaccaataaaataactaacaatcataaaaccacataaactaa |
25140630 |
T |
|
| Q |
301 |
aattaaatgtgtccctctaattaaattctttaagacaaatacatt |
345 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
25140629 |
aattaaatgtgaccctctaattaaattctttaaaacaaacacatt |
25140585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 25140930 - 25140802
Alignment:
| Q |
209 |
aattatccttatctaaacaaacacaacacaaacttcaaactcaattgaagcgtcaataaaataactaacaatcataaaaccacataaactaaaattaaat |
308 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||| || | |||||| |||| ||| ||| ||||||| | ||||||| |||| ||| |
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| T |
25140930 |
aattatccttatctaaacaaacaca--acaaatttcaaactcaatttaatctcaaataaactaacaaaccatcttaaaaccccttaaactataattgaat |
25140833 |
T |
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| Q |
309 |
gtgtccctctaattaaattctttaagacaaa |
339 |
Q |
| |
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||| ||||||||| |||||| |||| ||||| |
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| T |
25140832 |
gtgaccctctaatcaaattccttaaaacaaa |
25140802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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