View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_104 (Length: 371)

Name: NF0846_low_104
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_104
NF0846_low_104
[»] chr5 (7 HSPs)
chr5 (38-197)||(34238453-34238611)
chr5 (14-150)||(34230392-34230526)
chr5 (259-338)||(34230618-34230697)
chr5 (259-338)||(34238673-34238752)
chr5 (274-325)||(42119132-42119183)
chr5 (269-307)||(42125742-42125780)
chr5 (273-324)||(42130947-42130998)
[»] chr4 (1 HSPs)
chr4 (273-319)||(11120516-11120562)
[»] chr3 (2 HSPs)
chr3 (273-323)||(8525199-8525249)
chr3 (266-322)||(8528648-8528703)
[»] chr6 (1 HSPs)
chr6 (273-323)||(25520840-25520890)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 34238453 - 34238611
Alignment:
Q  38 tattctcacttttcacaaagtcctaaccgtgtttttctaacacttgcttaagttgactatgaccttatgaagtcaatccaaacaacttatattggtttgg 137  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34238453 tattctcacttttcacaaagtcctaaccgtgttttcc-aacacttgcttaagttgactatgaccttatagagtcaatccaaacaacttatattggtttgg 34238551  T
Q  138 tttttcattctttagctatactaactactttccacaaaattatccatggagaagtgcttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34238552 tttttcattctttagctatactaactactttccacaaaattatccatggagaagtgcttg 34238611  T

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Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 34230392 - 34230526
Alignment:
Q  14 atatctgcaaagtcaaggcagaagtattctcacttttcacaaagtcctaaccgtgtttttctaacacttgcttaagttgactatgaccttatgaagtcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||| |    
T  34230392 atatctgcaaagtcaaggcagaagtattctcacttttcacaaagtcctaaccgtgttt--ccaacacttgcttaagttgactatgaccttatgaagtcga 34230489  T
Q  114 tccaaacaacttatattggtttggtttttcattcttt 150  Q
    |||||||||||||||||||||||||||||||||||||    
T  34230490 tccaaacaacttatattggtttggtttttcattcttt 34230526  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 34230618 - 34230697
Alignment:
Q  259 actcctccttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230618 actcctccttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgtt 34230697  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 34238673 - 34238752
Alignment:
Q  259 actcctccttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34238673 actcctccttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgtt 34238752  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 42119183 - 42119132
Alignment:
Q  274 atcatgatgagagctttgctttgcttcagttcaagtcctccttcactataga 325  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcactataga 42119132  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 42125780 - 42125742
Alignment:
Q  269 atgtcatcatgatgagagctttgctttgcttcagttcaa 307  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  42125780 atgtcatcatgatgagagctctgctttgcttcagttcaa 42125742  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 42130998 - 42130947
Alignment:
Q  273 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactatag 324  Q
    |||||| |||| |||| ||||||||||||||||||||| ||||||| |||||    
T  42130998 catcataatgacagctctgctttgcttcagttcaagtcatccttcattatag 42130947  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 11120562 - 11120516
Alignment:
Q  273 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 319  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11120562 catcacgatgagagctttgctttgcttcagttcgagtcctccttcac 11120516  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 8525249 - 8525199
Alignment:
Q  273 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 323  Q
    |||||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  8525249 catcattatgagagctctgctttgcttcatttcaagtcatccttcactata 8525199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 8528703 - 8528648
Alignment:
Q  266 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactat 322  Q
    |||||| |||||||||| || || || |||||||||||||||||| |||||||||||    
T  8528703 cttatgccatcatgatgtgaactatg-tttgcttcagttcaagtcatccttcactat 8528648  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 25520840 - 25520890
Alignment:
Q  273 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 323  Q
    |||| ||||||||||| |||| |||||||||| || |||||||||||||||    
T  25520840 catcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 25520890  T

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