View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_106 (Length: 364)
Name: NF0846_low_106
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_106 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 6711398 - 6711042
Alignment:
| Q |
1 |
tttagcatcaccaccaacttcactattgttgtttctttgcttacttttagtcagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtg |
100 |
Q |
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| T |
6711398 |
tttagcatcaccaccaacttcactattgttgtttctttgcttactcttagttagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtg |
6711299 |
T |
|
| Q |
101 |
ttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttcgagcgatctcaattgaaagcctcactcttcgatctctcaaaccttgagaag |
200 |
Q |
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| T |
6711298 |
ttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaactttcgagcgatctcaatcgaaagcctcactcttcgatctctcaaaccttgagaag |
6711199 |
T |
|
| Q |
201 |
tgtaaatcttgctgtgtcggtctttcttcaccggtttctttgcgaggaaacaggaaataccatagtgagaaccaccaccaagagatgaaggatcttgttt |
300 |
Q |
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| T |
6711198 |
tgtaaatcttgctgtgtcggtctttcttcaccggtttctttgcgaggaaacaggaaataccatagtgagaaccaccaccaagagatgaaggatcttgttt |
6711099 |
T |
|
| Q |
301 |
aggcattggaatagcaatgttattattattgttgttactattattgttatattcttg |
357 |
Q |
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| T |
6711098 |
aggcattggaatagcaatgttattattattgttgttactattattgttattttcttg |
6711042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 6032184 - 6032025
Alignment:
| Q |
81 |
tgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttcgagcgatctcaattgaaagcctcactcttcg |
180 |
Q |
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| T |
6032184 |
tgaagagccattcaagtgtgttgcttgctttgtcaaaccctaacatgtcttgaagatcgaagaacttcctcgcgatctcgatggaaagtctcacccttct |
6032085 |
T |
|
| Q |
181 |
atctctcaaaccttgagaagtgtaaatcttgctgtgtcggtctttcttcaccggtttctt |
240 |
Q |
| |
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|||||||| |||||||| |||| ||||||||| || | ||||||||| |||||||||| |
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| T |
6032084 |
gtctctcaacccttgagatgtgtgaatcttgctatgcctgtctttcttagccggtttctt |
6032025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 46795341 - 46795417
Alignment:
| Q |
73 |
agattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttc |
149 |
Q |
| |
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|||||| ||||||||||| ||||||||||| || | |||||||||| ||||||| ||||||||||| ||||| |||| |
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| T |
46795341 |
agatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttc |
46795417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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