View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_108 (Length: 361)
Name: NF0846_low_108
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 40878244 - 40878552
Alignment:
| Q |
30 |
catggtcgcacgtgcatgcagagtgcttt-acaatcattgttgtgactgcatcactcctccacacaaccccatataaactgttttcatggttacaccatt |
128 |
Q |
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| T |
40878244 |
catggtcgcacgtgcatgcagagagcttttacaatcattgttgtgactgcatcactcctccacacaaccccatataa-ctgttttcatggttacaccatt |
40878342 |
T |
|
| Q |
129 |
ttcatcaactgcttccatgtaaattatcgtagtatatgatatcaattcttgattannnnnnnnnnnncataaagatccttcaatttttaaatttctttgt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
40878343 |
ttcatcaactgcttccatgtaaattatcgtagtatatgatattaattcttgattatttttcttttttcatagagatccttcaatttttaaatttctttgt |
40878442 |
T |
|
| Q |
229 |
ttgtgaacatatactttacaattttattaattatgtaaaaatttaacnnnnnnnnaaatagcttaattgctagaattcatttttgtaagtgaataagtga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878443 |
ttgtgaacatatactttacaattttattaattatgtaaaaatttaa-atttttttaagtagcttaattgctagaattcatttttgtaagtgaataagtga |
40878541 |
T |
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| Q |
329 |
gagtgtctgtg |
339 |
Q |
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|||||| |||| |
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| T |
40878542 |
gagtgtttgtg |
40878552 |
T |
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