View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_109 (Length: 361)
Name: NF0846_low_109
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 24406370 - 24406228
Alignment:
| Q |
1 |
ctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaatgaat |
100 |
Q |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406370 |
ctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaatgaat |
24406271 |
T |
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| Q |
101 |
tatgttcaacattgttgtggttaatttgtatttaagcttttgt |
143 |
Q |
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| T |
24406270 |
tatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 24420343 - 24420158
Alignment:
| Q |
1 |
ctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaatgaat |
100 |
Q |
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|||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||| | |||||| ||||||||||| |
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| T |
24420343 |
ctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctattat---ttgaaaaaatttcaatgaat |
24420247 |
T |
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| Q |
101 |
tatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaaacagtctactctccacattgaattaagagccttattttg |
196 |
Q |
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||| |||| ||||||||||||||||||||||| || |||||||| ||||||| |||||| || ||| ||||||||||||||||||||| |
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| T |
24420246 |
tatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaaaaagtctatgctttacagtgaattaagagccttattttg |
24420158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24471277 - 24471402
Alignment:
| Q |
1 |
ctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttcaatgaat |
100 |
Q |
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|||| |||||||||| |||||||||||||||||| | ||||||||| |||||| |||||||||| ||| ||| | |||||||||||||||||||| |
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| T |
24471277 |
ctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctatcat---ttgaaattttttcaatgaat |
24471373 |
T |
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| Q |
101 |
tatgttcaacattgttgtggttaatttgt |
129 |
Q |
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||| |||| |||||||||||||||||||| |
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| T |
24471374 |
tatattcagcattgttgtggttaatttgt |
24471402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
| Q |
198 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
245 |
Q |
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| T |
24406231 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
24406184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 24475980 - 24475844
Alignment:
| Q |
8 |
acctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaag-ctttcggatataacaacttgaaattttttcaatgaattatgtt |
106 |
Q |
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|||||||| || |||| || | ||||| ||||||||||| ||||||| ||||||| ||| ||| |||| | ||||||||||||||| ||||||| || |
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| T |
24475980 |
acctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttgaaattttttcaaagaattatatt |
24475881 |
T |
|
| Q |
107 |
caacattgttgtggttaatttgtatttaagcttttgt |
143 |
Q |
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|| ||||||| |||||||||||||| |||||||||| |
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| T |
24475880 |
cagcattgttctggttaatttgtatcgaagcttttgt |
24475844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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