View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_111 (Length: 355)
Name: NF0846_low_111
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_111 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 3313259 - 3312955
Alignment:
| Q |
7 |
tccaagaatatcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctca |
106 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||| ||||| ||| |
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| T |
3313259 |
tccaaggatatcaagtagacgtacatctcttgttgtgatgattattatacttcctggaccaatcccatttcgatttccgcataatgaattgaattgatca |
3313160 |
T |
|
| Q |
107 |
gaggaactcacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttc |
206 |
Q |
| |
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| |||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||| | |
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| T |
3313159 |
aactcactcacatcatcaagtacaacaagtgcccgttttgtgacaagtcgttccttaatcatagcttttccaaactcaacactatgcacctttatcttcc |
3313060 |
T |
|
| Q |
207 |
ttgttttgaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
3313059 |
ttgttttgaggatatctgaaagaagttgttcttgtaaatcgattctacccctatctttctcccaaacttctctaatattagcaaggaagctttgatcttc |
3312960 |
T |
|
| Q |
307 |
aaatt |
311 |
Q |
| |
|
||||| |
|
|
| T |
3312959 |
aaatt |
3312955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 3393256 - 3393555
Alignment:
| Q |
9 |
caagaatatcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcaga |
108 |
Q |
| |
|
|||| |||| ||||| ||||| |||||| |||||||||||||||| |||||| |||||| | ||||| | | ||||||||||| ||||||||| |
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| T |
3393256 |
caaggatattaagtacacgcagatctctggttgtgatgattattacacttcccggaccaacactatttcctt---cacatagtgcattaaattgctcaag |
3393352 |
T |
|
| Q |
109 |
ggaactcacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttctt |
208 |
Q |
| |
|
||| |||||||||||| || ||||| |||||| | |||||||| |||||||||||||||||| ||| | |||| ||||||||||||||||| |
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|
| T |
3393353 |
ctcactaacatcatcaagtacagcaagtatgcgttttgaacgaagtcgttgcttgatcatagcttttccttgctcaacactaagcacctttatctttctt |
3393452 |
T |
|
| Q |
209 |
gttttgaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaa |
308 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3393453 |
gttttcaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttctctaatattagcaacgaagctttgatcttcaa |
3393552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 3362627 - 3362328
Alignment:
| Q |
9 |
caagaatatcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcaga |
108 |
Q |
| |
|
|||| |||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||| | |||||| | ||| ||||||| ||||| ||| |
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|
| T |
3362627 |
caaggatattaagtacacgcagatctctggttgtgatgattattatacttcctggaccaacactatttcgttg---gcagagtgcatcaaattgttcaag |
3362531 |
T |
|
| Q |
109 |
ggaactcacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttctt |
208 |
Q |
| |
|
||| |||||||||||| || ||||| |||||| || |||| ||| ||||||||||| |||||| ||| | |||| ||||||||||||||||| |
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|
| T |
3362530 |
ctcactaacatcatcaagtacagcaagtatgcgttttgcgcgaagttgttgcttgatcatagtttttccttgctcaacactaagcacctttatctttctt |
3362431 |
T |
|
| Q |
209 |
gttttgaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaa |
308 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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|
| T |
3362430 |
gttttgaggatatctgaaagaaattgttcttgtaaatcgattctgcccctatctttctcccaaacttctctaatattagcaaggaagctttgattttcaa |
3362331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 15801393 - 15801089
Alignment:
| Q |
7 |
tccaagaatatcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctca |
106 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||| ||||||||||||||| |
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|
| T |
15801393 |
tccaaggatgtcaagtagacgtgcatctcttgttgtgatgattattatgcttcctggaccaatcccatttcgatttccacataatgcatttaattgctcg |
15801294 |
T |
|
| Q |
107 |
gaggaactcacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttc |
206 |
Q |
| |
|
| ||| |||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||| | | |||||||||||| |||| |
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|
| T |
15801293 |
cgtgtactgacatcatcaagtataacaagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttc |
15801194 |
T |
|
| Q |
207 |
ttgttttgaggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttc |
306 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15801193 |
ttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttc |
15801094 |
T |
|
| Q |
307 |
aaatt |
311 |
Q |
| |
|
||||| |
|
|
| T |
15801093 |
aaatt |
15801089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18924283 - 18924249
Alignment:
| Q |
34 |
tcttgttgtgatgattattatacttccatgaccaa |
68 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18924283 |
tcttgttgtgatgattattatacttccttgaccaa |
18924249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 34715660 - 34715697
Alignment:
| Q |
31 |
atctcttgttgtgatgattattatacttccatgaccaa |
68 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
34715660 |
atctctcgttgtgatgattattatacttccttgaccaa |
34715697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 34721218 - 34721259
Alignment:
| Q |
29 |
acatctcttgttgtgatgattattatacttccatgaccaatc |
70 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
34721218 |
acatctcttgttgtgatgattattacacttccttgacaaatc |
34721259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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