View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_112 (Length: 353)
Name: NF0846_low_112
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 349
Target Start/End: Original strand, 32989283 - 32989610
Alignment:
| Q |
22 |
catcatcatgtgaaggaagtactctattatcattgtagtgataataattatcagattgtttagaagtaacaataatacgcttcaaccatttcaccattct |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989283 |
catcaacatgtgaaggaagtactctattatcattgtagtgataataattatcagattgtttagaagtaacaataatacgcttcaaccatttcaccattct |
32989382 |
T |
|
| Q |
122 |
tcctccaatgaaaccaggtattataattctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989383 |
tcctccaatgaaaccaggtattataattctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaa |
32989482 |
T |
|
| Q |
222 |
ggatccaatgcaacctcccttgtgatactagttccatatttggatccaccaccacctggcagttcctcagcaccttcaaaacatacatagagggccccac |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32989483 |
ggatccaatgcaacctcccttgtgatactagttccatatttggatccaccaccacctggaagttcctcagcaccttcaaaacatacatagagggccccac |
32989582 |
T |
|
| Q |
322 |
tgttacggttcaagatgccacaactctt |
349 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
32989583 |
tgttacggttcaagatgccacaactctt |
32989610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 345
Target Start/End: Original strand, 32961634 - 32961943
Alignment:
| Q |
36 |
ggaagtactctattatcattgtagtgataataattatcagattgtttagaagtaacaataatacgcttcaaccatttcaccattcttcctccaatgaaac |
135 |
Q |
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||||||||||| ||||||| ||| ||||||| ||||||||| ||| | || ||||| || |||||||||||||||||||||||||| || |||||| |
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| T |
32961634 |
ggaagtactctgttatcatggtaatgataatggctatcagattctttggttgttacaatgattcgcttcaaccatttcaccattcttccggcagtgaaac |
32961733 |
T |
|
| Q |
136 |
caggtattataattctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaaggatccaatgcaac |
235 |
Q |
| |
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|||| | |||| | ||||||||||| ||||| || | |||||| ||||| ||||||||||| || | ||||||||| | | ||||||||||||| |
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| T |
32961734 |
caggaacgataacccgtacaggaaaaccgtgatcaggagctaaaacctcaccattttgcatatacgccaaaatgatatcgctagtgcgatccaatgcaac |
32961833 |
T |
|
| Q |
236 |
ctcccttgtgatactagttccatatttggatccaccaccacctggcagttcctcagcaccttcaaaacatacatagagggccccactgttacggttcaag |
335 |
Q |
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||| || |||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| || |
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| T |
32961834 |
ctcgctgaggatactagttccatattttgaaccaccaccacctggaagttcctcagcaccttcaaagcatacatagagggccccacttttacggttaaat |
32961933 |
T |
|
| Q |
336 |
atgccacaac |
345 |
Q |
| |
|
|| ||||||| |
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| T |
32961934 |
attccacaac |
32961943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 24865440 - 24865727
Alignment:
| Q |
22 |
catcatcatgtgaaggaagtactctattatcattgtagtgataataattatcagattgtttagaagtaacaataatacgcttcaaccatttcaccattct |
121 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| || || ||||||| | |||| ||| | || |||||||| ||| | ||| | |||||||||||| || |
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| T |
24865440 |
catcaacatgagaaggaagaactctattatccttataatgataatgaccatcacattcatcagtagtaacaacaatcctcttaagccatttcaccatcct |
24865539 |
T |
|
| Q |
122 |
tcctccaatgaaaccaggtattataattctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaa |
221 |
Q |
| |
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||| || || ||||| ||||| |||| || || ||||| |||||||| || | ||| | || || || ||||| || |||||||| | |||||| ||| |
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| T |
24865540 |
tccaccgataaaacccggtataataaccctcaccggaaacccatgatccggagccaaagcctcgccattctgcatgtaagcaagaataacatcacgagaa |
24865639 |
T |
|
| Q |
222 |
ggatccaatgcaacctcccttgtgatactagttccatatttggatccaccaccacctggcagttcctcagcaccttcaaaacatacat |
309 |
Q |
| |
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||||||| |||| || || | ||||||||||||||||| || |||||||| || || | ||||||||||| | |||||| |||| |
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| T |
24865640 |
ggatccatcgcaatttctctcttaatactagttccatatttcgacccaccaccgccgggtaaatcctcagcaccataaaaacaaacat |
24865727 |
T |
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