View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_115 (Length: 345)
Name: NF0846_low_115
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_115 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 37512171 - 37512480
Alignment:
| Q |
30 |
ctaatgttatgtcgtatgatgttaatcatccatttaattttatgttgtattccatttcgggtgagagatttgagaagaaggtcaaattggaatggccaaa |
129 |
Q |
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| T |
37512171 |
ctaatgttatgtcgtatgatgttaatcatccatttaattttatgttgtattccatgtcgggtgagagatttgagaagaaggtcaaattgaaatggccaaa |
37512270 |
T |
|
| Q |
130 |
tccattcaatgaggatgaccctcatcctggtttttacatttttggtcctgctagtattaatgatgttctatctctctatataaagattctcgtaaaaatt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37512271 |
tccattcaatgaggatgaccctcatcctggtttttacatttttggtcctgctagtattaatgatgttctatgtctctatataaagattctcgtaaaaatt |
37512370 |
T |
|
| Q |
230 |
atggaagagttttattatgcaacccaactattgaggaaatcaaggtcattcctcgcaacccttttggttataaaactccatatcgcacccctgtttttga |
329 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37512371 |
atggaagagttttattatgcaacctaactattgaggaaatcaaggtcattcctcgcaacccttttggttataaaactccatatcgcacccctgtttttga |
37512470 |
T |
|
| Q |
330 |
tattcttgga |
339 |
Q |
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||||| |||| |
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| T |
37512471 |
tattcatgga |
37512480 |
T |
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