View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_117 (Length: 344)
Name: NF0846_low_117
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 32729388 - 32729307
Alignment:
| Q |
165 |
catttgaatcatccgtatggccatcgcctttggcaccatacttaacaacattgaagtaattttggcacaaacaaggtgaagc |
246 |
Q |
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| T |
32729388 |
catttgaatcatccgtatggccatcgcctttggcaccatacttaacaacattgaagtaattttggcacaaacaaggtgaagc |
32729307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 32729533 - 32729454
Alignment:
| Q |
20 |
cacagacattttgccatgcattcgtaaaagcctttttgcaagaaagtttaaaaattgtattagatttgaaattttgtttc |
99 |
Q |
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| T |
32729533 |
cacacacatcttgccatgcattcgtaaaagcctttttgcaagaaagtttaaaagttgtatcagatttgaaattttgtttc |
32729454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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