View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_12 (Length: 617)

Name: NF0846_low_12
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_12
NF0846_low_12
[»] chr3 (5 HSPs)
chr3 (402-612)||(47598508-47598717)
chr3 (30-336)||(47598783-47599082)
chr3 (441-552)||(31203325-31203438)
chr3 (220-249)||(30484880-30484909)
chr3 (284-312)||(47598807-47598835)
[»] chr5 (5 HSPs)
chr5 (402-545)||(8117175-8117319)
chr5 (444-552)||(28461395-28461504)
chr5 (219-252)||(30874635-30874668)
chr5 (288-324)||(2328898-2328934)
chr5 (297-333)||(8117385-8117421)
[»] chr1 (9 HSPs)
chr1 (415-582)||(25711018-25711186)
chr1 (402-547)||(36496838-36496982)
chr1 (409-552)||(50740760-50740901)
chr1 (442-552)||(19635608-19635719)
chr1 (218-252)||(47463666-47463700)
chr1 (219-252)||(33858165-33858198)
chr1 (219-252)||(33922725-33922758)
chr1 (219-252)||(19636115-19636148)
chr1 (216-252)||(44288056-44288092)
[»] chr6 (4 HSPs)
chr6 (404-547)||(31462652-31462797)
chr6 (442-547)||(15584904-15585010)
chr6 (285-333)||(31462532-31462580)
chr6 (216-252)||(31462464-31462500)
[»] chr8 (7 HSPs)
chr8 (402-526)||(25029387-25029511)
chr8 (402-535)||(27708128-27708260)
chr8 (465-547)||(13341354-13341437)
chr8 (219-252)||(5124565-5124598)
chr8 (219-252)||(27707956-27707989)
chr8 (219-252)||(25029659-25029692)
chr8 (222-251)||(32452458-32452487)
[»] scaffold0172 (2 HSPs)
scaffold0172 (402-547)||(30935-31081)
scaffold0172 (284-333)||(30818-30867)
[»] chr4 (7 HSPs)
chr4 (441-560)||(3124946-3125066)
chr4 (441-572)||(52643112-52643244)
chr4 (219-258)||(11388876-11388915)
chr4 (216-252)||(3125241-3125277)
chr4 (406-486)||(8367776-8367856)
chr4 (402-466)||(51850650-51850714)
chr4 (220-252)||(54857083-54857115)
[»] chr7 (6 HSPs)
chr7 (448-552)||(13726140-13726245)
chr7 (402-487)||(19835163-19835248)
chr7 (441-487)||(29452966-29453012)
chr7 (216-252)||(24375589-24375625)
chr7 (219-252)||(19423935-19423968)
chr7 (285-333)||(13726361-13726409)
[»] chr2 (7 HSPs)
chr2 (444-545)||(33803721-33803823)
chr2 (444-545)||(33808203-33808305)
chr2 (444-560)||(12733032-12733148)
chr2 (219-333)||(29264342-29264457)
chr2 (443-547)||(45710025-45710129)
chr2 (286-333)||(35819292-35819339)
chr2 (222-252)||(36421972-36422002)
[»] scaffold0252 (1 HSPs)
scaffold0252 (219-253)||(16648-16682)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 402 - 612
Target Start/End: Complemental strand, 47598717 - 47598508
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  47598717 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttaaaaaatgttagggtttacgaaattctataaatgccctaaa 47598618  T
Q  502 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcactgttatacaactatttgat 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47598617 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatattggatgaaacggtcgttatc-gctccgcactgttatacaactatttgat 47598519  T
Q  602 tctgtgctgct 612  Q
    || ||||||||    
T  47598518 tccgtgctgct 47598508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 47599082 - 47598783
Alignment:
Q  30 gtattatcttgttaataaaaaagaaaatggtcctattgttatgattcttactcatgcccggtgcaaaagagcagggttacctttcgaccataatagtcaa 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||    
T  47599082 gtattatcttgttaatgaaaaagaaaatggtcctattgttatgattcttactcatgccaagtgcaaaagagcaggtttacctttcgaccataata-tcaa 47598984  T
Q  130 tcccgaacagcggtggattgtggtcgacttcaaaagtgggatagcgttaatggtatgataaataacagttactaaannnnnnnnngtttgacaaattaca 229  Q
    ||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |           ||| ||||||||||    
T  47598983 tcccgaataacggtggatagtggtcgacttcaaaagtgggatagtgttaatggtatgataaatagcagttactga-----ttttttttttacaaattaca 47598889  T
Q  230 tgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnncttatatttaatattatattaaatataagattcaaatctcacgaga 329  Q
    |||||||||||| ||| |||||||||||||||| |||||||||           |||||||||||||| ||||||||||||||| |||||||||||||||    
T  47598888 tgaataatactacaaaatataaaataaaacatatatttctcaa-aaaaaaaaaacttatatttaatataatattaaatataagactcaaatctcacgaga 47598790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 552
Target Start/End: Complemental strand, 31203438 - 31203325
Alignment:
Q  441 gtgagaagagagaaaat-gttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttccta 538  Q
    |||||| |||||||||  |||||||||||| ||||||||| |||||||  ||||  | | |||||| |||| ||||| | || |||||||||||||||||    
T  31203438 gtgagacgagagaaaagagttgaaaaatgtcagggtttacaaaatcctcaaaatatctttaaaaaggttttaaaaattgagtcaatttaaaaatttccta 31203339  T
Q  539 ttaaaatcagatag 552  Q
    ||||||||| ||||    
T  31203338 ttaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 249
Target Start/End: Original strand, 30484880 - 30484909
Alignment:
Q  220 acaaattacatgaataatactataaagtat 249  Q
    ||||||||||||||||||||||||||||||    
T  30484880 acaaattacatgaataatactataaagtat 30484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 47598807 - 47598835
Alignment:
Q  284 cttatatttaatattatattaaatataag 312  Q
    |||||||||||||||||||||||||||||    
T  47598807 cttatatttaatattatattaaatataag 47598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 402 - 545
Target Start/End: Complemental strand, 8117319 - 8117175
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-a 500  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |    
T  8117319 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaatgccctaaa 8117220  T
Q  501 aaagatttttaaaatagggttaatttaaaaatttcctattaaaat 545  Q
    |||| |||| |||||||||| |||||  |||||||||| ||||||    
T  8117219 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaat 8117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 552
Target Start/End: Original strand, 28461395 - 28461504
Alignment:
Q  444 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaat-agggttaatttaaaaatttcctattaa 542  Q
    |||||||| |||  ||||||||| | |||||||||| |||||||  ||||||| |||||| | ||||||||  || || ||||||||||||||||| |||    
T  28461395 agaagagaaaaagagttgaaaaacgatagggtttacaaaatcctcaaaatgccttaaaaaaagttttaaaaacagagtcaatttaaaaatttcctactaa 28461494  T
Q  543 aatcagatag 552  Q
    ||||| ||||    
T  28461495 aatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 30874635 - 30874668
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||||||||||    
T  30874635 gacaaattacatgaataatactataaagtataaa 30874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 2328898 - 2328934
Alignment:
Q  288 tatttaatattatattaaatataagattcaaatctca 324  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  2328898 tatttaatattaaattaaatataatattcaaatctca 2328934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 8117421 - 8117385
Alignment:
Q  297 ttatattaaatataagattcaaatctcacgagacatt 333  Q
    ||||||||||||||| | |||||||||||||||||||    
T  8117421 ttatattaaatataacactcaaatctcacgagacatt 8117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 415 - 582
Target Start/End: Original strand, 25711018 - 25711186
Alignment:
Q  415 atagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaa 513  Q
    |||||||||||| ||||| ||||   ||||||||||||||||  |||||||||||||||||||||||||||||  |||| |||| |||||| |||| |||    
T  25711018 atagaagagtgtgtttcacggcacaggtgagaagagagaaaaacttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaaaggttttaaaa 25711117  T
Q  514 atagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcac 582  Q
    ||||||| |||||  |||||||||| |||||||| || |||| |||| ||| || |||| |||||||||    
T  25711118 atagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgctccgcac 25711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 402 - 547
Target Start/End: Complemental strand, 36496982 - 36496838
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaa- 500  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||  ||||||||| ||||||||||||| ||||||||||||||||  |||||| ||||     
T  36496982 cataagatagaagatagaagagtgtgtttcgcggcacatgtgag--gagagaaaaagttgaaaaatgttggggtttacgaaatcctcaaaatgctctaat 36496885  T
Q  501 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 547  Q
    |||  |||| ||||||||||||||||| |||||||||| ||||||||    
T  36496884 aaatgttttaaaaatagggttaatttagaaatttcctactaaaatca 36496838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 409 - 552
Target Start/End: Complemental strand, 50740901 - 50740760
Alignment:
Q  409 tagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatc-ctataaatgccctaaaaagatt 507  Q
    ||||| |||||||||||| ||||  ||||   |||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  50740901 tagaagatagaagagtgtgtttcgcggcaaatgtgagaagagagaaa--gttgaaaaatgttagggtttacgaaatctcta-aaatgccctaaaaaggtt 50740805  T
Q  508 tttaaaatagggttaatttaaaaatttcctattaaaatcagatag 552  Q
    || |||||||| | |||||  |||||||||| |||||||| ||||    
T  50740804 ttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 442 - 552
Target Start/End: Complemental strand, 19635719 - 19635608
Alignment:
Q  442 tgagaagagagaaaatgttgaaaaatgttagg-gtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctatt 540  Q
    ||||||||||||||  |||||||||||||| | ||||| |||||||   ||||||||||||||| |||| |||||||||| |||||  |||||||||| |    
T  19635719 tgagaagagagaaagagttgaaaaatgttaagagtttaagaaatccccaaaatgccctaaaaaggttttaaaaatagggtcaatttggaaatttcctact 19635620  T
Q  541 aaaatcagatag 552  Q
    ||||||| ||||    
T  19635619 aaaatcaaatag 19635608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 47463700 - 47463666
Alignment:
Q  218 tgacaaattacatgaataatactataaagtataaa 252  Q
    |||||||||||||||||||||||||||||||||||    
T  47463700 tgacaaattacatgaataatactataaagtataaa 47463666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 33858165 - 33858198
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||||||||||    
T  33858165 gacaaattacatgaataatactataaagtataaa 33858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 33922758 - 33922725
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||||||||||    
T  33922758 gacaaattacatgaataatactataaagtataaa 33922725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 19636148 - 19636115
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||| ||||||||||||    
T  19636148 gacaaattacatgaataatacgataaagtataaa 19636115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 44288092 - 44288056
Alignment:
Q  216 tttgacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  44288092 tttgacaaattacataaataatactataaattataaa 44288056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 404 - 547
Target Start/End: Original strand, 31462652 - 31462797
Alignment:
Q  404 taagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct--aaa 501  Q
    |||| ||||| |||||||||||| ||||| ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||  |||    
T  31462652 taaggtagaagatagaagagtgtgtttcacggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaa 31462751  T
Q  502 aagatttttaaaatagggttaatttaaaaatttcctattaaaatca 547  Q
    ||| |||| |||||||| | |||||| |||||||||| ||||||||    
T  31462752 aaggttttaaaaataggctcaatttagaaatttcctactaaaatca 31462797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 442 - 547
Target Start/End: Original strand, 15584904 - 15585010
Alignment:
Q  442 tgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctatt 540  Q
    |||||||||| |||  |||||| ||||||||||||||||||||||   ||||||||| |||||| |||| |||||||||| ||||| ||||||||||| |    
T  15584904 tgagaagagaaaaagagttgaataatgttagggtttacgaaatccataaaatgccctaaaaaagtttttaaaaatagggtcaatttgaaaatttcctact 15585003  T
Q  541 aaaatca 547  Q
    |||||||    
T  15585004 aaaatca 15585010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 31462532 - 31462580
Alignment:
Q  285 ttatatttaatattatattaaatataagattcaaatctcacgagacatt 333  Q
    ||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  31462532 ttatatttaatataaaattaaatataacactcaaatctcacgagacatt 31462580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 31462464 - 31462500
Alignment:
Q  216 tttgacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  31462464 tttgacaaactacatgaataatactataaggtataaa 31462500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 402 - 526
Target Start/End: Complemental strand, 25029511 - 25029387
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 501  Q
    |||||||||||| |||||||||||| ||||  |||    |||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||||||    
T  25029511 cataagatagaagatagaagagtgtgtttcgcggctcaggtgagaagagagaaaaagttgaaaaatgttagggtttacaaaatcctcaaaatgccctaaa 25029412  T
Q  502 aagatttttaaaatagggttaattt 526  Q
    ||| |||| |||||||||| |||||    
T  25029411 aaggttttaaaaatagggtcaattt 25029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 402 - 535
Target Start/End: Original strand, 27708128 - 27708260
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 500  Q
    |||||||||||| |||||| ||||| ||||  ||||  |||||   ||||||||| |||||||||| ||||||||| |||||||||  ||||||||| ||    
T  27708128 cataagatagaagatagaatagtgtgtttcgcggcacaagtgac--gagagaaaaagttgaaaaatattagggtttgcgaaatcctcaaaatgccctaaa 27708225  T
Q  501 aaagatttttaaaatagggttaatttaaaaatttc 535  Q
    |||| |||| |||||||||| |||||  |||||||    
T  27708226 aaaggttttaaaaatagggtcaatttggaaatttc 27708260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 13341437 - 13341354
Alignment:
Q  465 aatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 547  Q
    ||||||||||||||| ||||||   ||||||||| |||||| |||| |||||||||| |||||  |||||||||| ||||||||    
T  13341437 aatgttagggtttaccaaatccccaaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatca 13341354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 5124598 - 5124565
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||||||||||    
T  5124598 gacaaattacatgaataatactataaagtataaa 5124565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 27707956 - 27707989
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||||||||||    
T  27707956 gacaaattacatgaataatactataaagtataaa 27707989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 25029692 - 25029659
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||| ||||||||||||||||    
T  25029692 gacaaattacatgaatattactataaagtataaa 25029659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 32452458 - 32452487
Alignment:
Q  222 aaattacatgaataatactataaagtataa 251  Q
    ||||||||||||||||||||||||||||||    
T  32452458 aaattacatgaataatactataaagtataa 32452487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 402 - 547
Target Start/End: Original strand, 30935 - 31081
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 500  Q
    |||||||||||| |||||||||||||||||  ||||   |||||||||||||||| ||||||||||||| | ||||||||||||||  ||||| ||| ||    
T  30935 cataagatagaagatagaagagtgtatttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttggcgtttacgaaatcctcaaaatgtcctaaa 31034  T
Q  501 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 547  Q
    |||  |||| |||||| ||| ||||| ||||||||||| ||||||||    
T  31035 aaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatca 31081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 30818 - 30867
Alignment:
Q  284 cttatatttaatattatattaaatataagattcaaatctcacgagacatt 333  Q
    |||||||||||||| | ||||||||||| | |||||||||| ||||||||    
T  30818 cttatatttaatataaaattaaatataacactcaaatctcatgagacatt 30867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 441 - 560
Target Start/End: Complemental strand, 3125066 - 3124946
Alignment:
Q  441 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctat 539  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||  |||||||||| |||||||||| ||||||| || ||||| ||||||||||      
T  3125066 gtgagaagagagaaaaagttaaaaaatgttagggtttacgaattcctcaaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgc 3124967  T
Q  540 taaaatcagatagtggatgaa 560  Q
    |||||||| ||||||| ||||    
T  3124966 taaaatcaaatagtggctgaa 3124946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 572
Target Start/End: Complemental strand, 52643244 - 52643112
Alignment:
Q  441 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctat 539  Q
    ||||||| |||||||  |||||||| ||||||||||||| ||||||   |||||| || |||||| |||| |||||||||| |||||  |||||||||      
T  52643244 gtgagaatagagaaagagttgaaaagtgttagggtttacaaaatccccaaaatgctctcaaaaaggttttaaaaatagggtcaatttggaaatttccttc 52643145  T
Q  540 taaaatcagatagtggatgaaacggtcgttatc 572  Q
    |||||||| | || || |||| |||| ||||||    
T  52643144 taaaatcaaacagcggctgaagcggttgttatc 52643112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 11388876 - 11388915
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaaataaaa 258  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11388876 gacaaattacatgaataatactctaaagtataaaataaaa 11388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 3125277 - 3125241
Alignment:
Q  216 tttgacaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3125277 tttgacaaattacatgaataatactatgaagtataaa 3125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 486
Target Start/End: Complemental strand, 8367856 - 8367776
Alignment:
Q  406 agatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcc 486  Q
    |||| ||| |||||||||||| ||||||||||    | ||||||||| ||  |||||||||||||||||||||| ||||||    
T  8367856 agatggaagatagaagagtgtgtttcatggcacatctaagaagagagtaagggttgaaaaatgttagggtttacaaaatcc 8367776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 51850650 - 51850714
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaa 466  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| |||||||||    
T  51850650 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaa 51850714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 54857115 - 54857083
Alignment:
Q  220 acaaattacatgaataatactataaagtataaa 252  Q
    ||||||||||||||||||| |||||||||||||    
T  54857115 acaaattacatgaataatagtataaagtataaa 54857083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 448 - 552
Target Start/End: Complemental strand, 13726245 - 13726140
Alignment:
Q  448 gagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctattaaaatc 546  Q
    ||||||||| |||||||||||  |||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  13726245 gagagaaaaagttgaaaaatgacagggtttacgaaatcctcaaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatc 13726146  T
Q  547 agatag 552  Q
    | ||||    
T  13726145 aaatag 13726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 487
Target Start/End: Complemental strand, 19835248 - 19835163
Alignment:
Q  402 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 487  Q
    |||||||||||| |||||||||||| ||||  ||||   |||| ||||||||||| |||||||||||| |||||||||||||||||    
T  19835248 cataagatagaagatagaagagtgtgtttcgcggcacaggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaatcct 19835163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 29452966 - 29453012
Alignment:
Q  441 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 487  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  29452966 gtgagaagagagaaaaagttgaaaaatgttatggtttacaaaatcct 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 24375625 - 24375589
Alignment:
Q  216 tttgacaaattacatgaataatactataaagtataaa 252  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24375625 tttgacaaattacatgaataatactataaactataaa 24375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 19423968 - 19423935
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaa 252  Q
    ||||| ||||||||||||||||||||||||||||    
T  19423968 gacaatttacatgaataatactataaagtataaa 19423935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 13726409 - 13726361
Alignment:
Q  285 ttatatttaatattatattaaatataagattcaaatctcacgagacatt 333  Q
    ||||||||||||| | ||||||||||| | |||||||||| ||||||||    
T  13726409 ttatatttaatataaaattaaatataacactcaaatctcatgagacatt 13726361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 545
Target Start/End: Original strand, 33803721 - 33803823
Alignment:
Q  444 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 542  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33803721 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33803820  T
Q  543 aat 545  Q
    |||    
T  33803821 aat 33803823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 545
Target Start/End: Original strand, 33808203 - 33808305
Alignment:
Q  444 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 542  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33808203 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33808302  T
Q  543 aat 545  Q
    |||    
T  33808303 aat 33808305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 560
Target Start/End: Original strand, 12733032 - 12733148
Alignment:
Q  444 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 542  Q
    |||||||||||| ||||||||||||||||| ||||||||||||   ||||||||| |||||| |||| |||||| ||    ||| ||||||||||| |||    
T  12733032 agaagagagaaagtgttgaaaaatgttaggatttacgaaatccccaaaatgccctcaaaaaggttttaaaaatatgg-ccgtttgaaaatttcctactaa 12733130  T
Q  543 aatcagatagtggatgaa 560  Q
    ||||| ||||||| ||||    
T  12733131 aatcaaatagtggctgaa 12733148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 29264457 - 29264342
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnn-cttatatttaatattatattaaatataagattca 317  Q
    ||||||||||||||||||||||||||||||||||  ||   ||| ||||||||||           |||||||||||||| | ||||||||||| | |||    
T  29264457 gacaaattacatgaataatactataaagtataaacaaacttataaatttctcaacaaaaaaaaaaacttatatttaatataaaattaaatataacactca 29264358  T
Q  318 aatctcacgagacatt 333  Q
    ||||||||||||||||    
T  29264357 aatctcacgagacatt 29264342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 547
Target Start/End: Original strand, 45710025 - 45710129
Alignment:
Q  443 gagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctattaa 542  Q
    ||||||||||||||  |||||||||| |||||||||||| || ||  ||| || |||||||   ||| |||||||||| ||||| |||||||||||  ||    
T  45710025 gagaagagagaaaaatttgaaaaatgatagggtttacgatattctcaaaaagctctaaaaatgatttaaaaatagggtcaatttgaaaatttcctaccaa 45710124  T
Q  543 aatca 547  Q
    |||||    
T  45710125 aatca 45710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 35819339 - 35819292
Alignment:
Q  286 tatatttaatattatattaaatataagattcaaatctcacgagacatt 333  Q
    |||||||||||| | ||||||||||| |||||||||||| ||||||||    
T  35819339 tatatttaatataaaattaaatataacattcaaatctcatgagacatt 35819292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 36421972 - 36422002
Alignment:
Q  222 aaattacatgaataatactataaagtataaa 252  Q
    |||||||||||||||||||||||||||||||    
T  36421972 aaattacatgaataatactataaagtataaa 36422002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 16648 - 16682
Alignment:
Q  219 gacaaattacatgaataatactataaagtataaaa 253  Q
    |||||||||||||||||||||||||||||| ||||    
T  16648 gacaaattacatgaataatactataaagtacaaaa 16682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 895 times since January 2019
Visitors: 6038